PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A01534.1.p
Common NameEUGRSUZ_A01534, LOC104438336
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRF
Protein Properties Length: 429aa    MW: 45752.8 Da    PI: 7.7715
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A01534.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC83.71.5e-26170213144
               WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                       d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e
  Eucgr.A01534.1.p 170 DPEPGRCRRTDGKKWRCSRDVVPGQKYCERHMHRGRNRSRKPVE 213
                       79***************************************987 PP
2QLQ53.76.5e-1996132137
               QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                       s+F++aQ+q+L+ Q+l+y+y++a++ vP+eLlq+i+k
  Eucgr.A01534.1.p  96 SYFSWAQWQELELQALIYRYMLAGATVPAELLQPIKK 132
                       79*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.6E-1296132IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.2E-1397130IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.22197132IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.353170214IPR014977WRC domain
PfamPF088791.4E-22171213IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MDLQLKQWRK QQDGSEPLSE AAAAAAEAPS AKLPRLVLDE PHHPQSQSQS QPMQSLAAAS  60
STLPLFVPDK LSSNMSAAAF PDSAPAAPRS FPRMGSYFSW AQWQELELQA LIYRYMLAGA  120
TVPAELLQPI KKSLLQAPYF LHHPLGHLQH YPQYQPALLQ AGYWGRASMD PEPGRCRRTD  180
GKKWRCSRDV VPGQKYCERH MHRGRNRSRK PVEIPTSAAA ANGGGTARGF SGTSLKSADP  240
AVVAATAAPL AAVAGGGGHF SLSGPSSSID LFQSYSEPKS DGNKHLFESQ GEVNGGSRSD  300
GHILRHFFDD WPRSLQDSDN SSSNASPMSS STCLSISIPG NPSSDVSLKL STGHGDEPST  360
NDRDAAAERD HPPQLGNWGT GWSPNQVASM GGPLAEALRS STSHSSSPTS VLHQVPRGLA  420
SEASYVST*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A01534.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049767.10.0PREDICTED: growth-regulating factor 3
SwissprotQ8L8A71e-91GRF4_ARATH; Growth-regulating factor 4
TrEMBLA0A059DFI20.0A0A059DFI2_EUCGR; Uncharacterized protein
STRINGXP_010049767.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19262667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.12e-80growth-regulating factor 4
Publications ? help Back to Top
  1. Kuijt SJ, et al.
    Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
    Plant Physiol., 2014. 164(4): p. 1952-66
    [PMID:24532604]
  2. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]