PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A01297.1.p
Common NameEUGRSUZ_A01297, LOC104436766
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 307aa    MW: 34470.9 Da    PI: 8.1734
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A01297.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000225476123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C+ C + F++   L  H+++H
  Eucgr.A01297.1.p 54 YSCSFCRREFRSAQALGGHMNVH 76
                      99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.38E-65180No hitNo description
PROSITE profilePS5015711.2195481IPR007087Zinc finger, C2H2
SMARTSM003550.00985476IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEHAHQFLMW PKRTLSSPFK VPNNPSYDDS WEEQAFAEDA AGSLGGCIWP PRSYSCSFCR  60
REFRSAQALG GHMNVHRRDR ARLKQSPVPQ SEILHPEHQN HPNHIRESMP HLGFPSRPQL  120
CTLFYNPNPN SIRPGAFISP TSASPSRVSS PLIEGVYNDR STVINPYYSS LTSESRAQTT  180
MSCLPSRSNL LGEKCCRIVD ADLIGENSST LHREGERAKD LVKTDMSVSL NLFIQSRPTL  240
SSCDEEAISR KRKRTDASNL PFFLKPSAVV RHHVQPAEVC EISPRPIEDL DLELRLGDRP  300
KVNLQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-124976229superman protein
2l1o_A1e-124976229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A01297.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ4184752e-34HQ418475.1 Malus x domestica transcriptional regulator superman (SUP4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047944.10.0PREDICTED: uncharacterized protein LOC104436766
TrEMBLA0A059DF140.0A0A059DF14_EUCGR; Uncharacterized protein
STRINGXP_010047944.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110472534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.15e-29zinc-finger protein 10