PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.A01279.2.p | ||||||||
Common Name | EUGRSUZ_A01279, LOC104436646 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 743aa MW: 82996.7 Da PI: 6.4672 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 390 | 2.7e-119 | 369 | 740 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l++lL++cA+av+++d+ ++++L+++++++sp gd +qRla++++ AL+ar a+++s++yk l +++ts ++ l+a++lf ++P+ k+ Eucgr.A01279.2.p 369 LRTLLINCAQAVAADDHLSTSEFLKQIRQHSSPFGDGNQRLAHCLADALEARQAGTGSQIYKGLISKRTS---AANILKAYHLFLAACPFRKL 458 6789************************************************************999998...899***************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 sh+taN++I ++ + rvHiiDf+i +G+QWp+L+q ++sRp+gpp++RiTg++ p++g +e++eetg+rLa +Ae ++vpfe+n+ +ak Eucgr.A01279.2.p 459 SHFTANRTIRSVASDSMRVHIIDFGILYGFQWPTLMQRFSSRPGGPPKVRITGIDFPQPGfrPAERVEETGRRLAAYAELFKVPFEYNA-IAK 550 ***********************************************************9*****************************.7** PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 ++e++++eeL+++++E l+Vn++++ ++lldesv+ +s r+ v+kl+++++P+v+++ + ++n++ F++rf eal ++salfd+le+ +pr Eucgr.A01279.2.p 551 KWETIQVEELKIDKDELLVVNCIYRSKNLLDESVAADSMRNMVIKLIRRINPDVFIHGILNGSYNAPFFVTRFREALFHFSALFDMLETLVPR 643 ********************************************************************************************* PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370 e++er+ +E+e++gre+ nv+aceg er+er et+++W+ r +aGF + p++ +++k a ++ + + ++++e+ +l+lgWk+r ++++ Eucgr.A01279.2.p 644 ENRERMLIEKEMFGREALNVIACEGWERVERPETYKQWQVRNLRAGFVQHPFDRDIVKMATEKVQSSYHKDFMIDESGRWLLLGWKGRIIYAL 736 ********************************************************************888********************** PP GRAS 371 SaWr 374 SaW+ Eucgr.A01279.2.p 737 SAWK 740 ***8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.758 | 343 | 720 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.4E-117 | 369 | 740 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 743 aa Download sequence Send to blast |
MGMDPRFNGY SASVAGLSLD KQSLPWFADP TLVPGDRLET NGFRGGVQYV SSPVATQISG 60 APSASNSCMT QEEDSPEDCD FSDAVLRYIS EMLMEEDMEE KNCMLQESLD LQVAEKSLYE 120 AIGKKYPPSP EPVPNNTYLT GESPEDDLSV NSYGCLMNNP LVSHSCENTS LRQVPSLSLY 180 GLSQSSYASS NSGVGGMDGF VDSPASVAQG PDFSGESHSI WQFNKGVEEA SKFLPGGNRF 240 FDNAVSKGSL TESKVRSSKV AAKLERKDHC ECSPNGSRGR KNPHRGDADL EEERSSKQAA 300 VFSESPLRSD MFDNVLICDE DQDHITVLQE TLQDGRDTVN MLRNGQSKGL KGGKGRGRKQ 360 NGKKEVIDLR TLLINCAQAV AADDHLSTSE FLKQIRQHSS PFGDGNQRLA HCLADALEAR 420 QAGTGSQIYK GLISKRTSAA NILKAYHLFL AACPFRKLSH FTANRTIRSV ASDSMRVHII 480 DFGILYGFQW PTLMQRFSSR PGGPPKVRIT GIDFPQPGFR PAERVEETGR RLAAYAELFK 540 VPFEYNAIAK KWETIQVEEL KIDKDELLVV NCIYRSKNLL DESVAADSMR NMVIKLIRRI 600 NPDVFIHGIL NGSYNAPFFV TRFREALFHF SALFDMLETL VPRENRERML IEKEMFGREA 660 LNVIACEGWE RVERPETYKQ WQVRNLRAGF VQHPFDRDIV KMATEKVQSS YHKDFMIDES 720 GRWLLLGWKG RIIYALSAWK PA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 8e-50 | 352 | 741 | 1 | 379 | Protein SCARECROW |
5b3h_D | 8e-50 | 352 | 741 | 1 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.A01279.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010047793.1 | 0.0 | PREDICTED: scarecrow-like protein 9 | ||||
Refseq | XP_010047802.1 | 0.0 | PREDICTED: scarecrow-like protein 9 | ||||
Swissprot | O80933 | 0.0 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A059DEZ8 | 0.0 | A0A059DEZ8_EUCGR; Uncharacterized protein | ||||
STRING | XP_010047793.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.A01279.2.p |
Entrez Gene | 104436646 |