PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A01233.1.p
Common NameEUGRSUZ_A01233, ZFP7
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 159aa    MW: 17682.8 Da    PI: 10.375
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A01233.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.0001379101123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++Cg  F +   L  H+r+H
  Eucgr.A01233.1.p  79 HECSICGLKFANGQALGGHMRKH 101
                       78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139128.7E-122953IPR007087Zinc finger, C2H2
PROSITE profilePS501579.393057IPR007087Zinc finger, C2H2
SuperFamilySSF576674.38E-830101No hitNo description
SMARTSM003550.433052IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.600.00177102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.49479106IPR007087Zinc finger, C2H2
PfamPF139126.3E-979102IPR007087Zinc finger, C2H2
SMARTSM003550.01779101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MSLDVANCLI FLSRSVNIMP RRTDCHGGAF ECKTCKRQFP SFQALGGHRT SHKRLRLSEP  60
KVEDCTELSL GSMVKPKIHE CSICGLKFAN GQALGGHMRK HRVEVLSEVA TNMNSVVPVF  120
RKSSSINRRV ISLDLNLSPL ENDLKILPGE LMPRKLIR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A01233.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4801950.0KC480195.1 Eucalyptus grandis C2H2-type zinc finger protein 7 (ZFP7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047376.11e-113PREDICTED: zinc finger protein ZAT11
TrEMBLM9Z0V01e-111M9Z0V0_EUCGR; C2H2-type zinc finger protein 7
STRINGXP_010047376.11e-112(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-35C2H2 family protein