![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.A01230.1.p | ||||||||
Common Name | EUGRSUZ_A01230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 178aa MW: 19820 Da PI: 9.7927 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00065 | 42 | 64 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ Fs+ L H +H Eucgr.A01230.1.p 42 YECKTCNRQFSSFQALGGHRASH 64 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 10.8 | 0.0015 | 91 | 113 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F L H+r+H Eucgr.A01230.1.p 91 HECSVCGLKFALGQALGGHMRKH 113 78********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 7.8E-5 | 34 | 66 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.24E-8 | 41 | 113 | No hit | No description |
Pfam | PF13912 | 4.7E-12 | 42 | 66 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.11 | 42 | 64 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.512 | 42 | 69 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 44 | 64 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.2E-9 | 91 | 115 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.66 | 91 | 118 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.21 | 91 | 113 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 93 | 113 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 178 aa Download sequence Send to blast |
MKRTRDDYER MSLDMAKCLM LLSHGVNAEL KRAAVHQTED NYECKTCNRQ FSSFQALGGH 60 RASHKKPKLL QNKPGDCTKL ALGGTAETKM HECSVCGLKF ALGQALGGHM RKHRAELMSG 120 NMMNMDEFFG INSTVPVLNR SNSSSKRVMG LDLNLTPLEN DLKFLFGKMY PRTVAFS* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.A01230.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010068234.2 | 1e-121 | PREDICTED: zinc finger protein ZAT1 | ||||
TrEMBL | A0A059DEB6 | 1e-129 | A0A059DEB6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010068234.1 | 1e-112 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM531 | 28 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G37430.1 | 1e-46 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.A01230.1.p |