PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A01230.1.p
Common NameEUGRSUZ_A01230
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 178aa    MW: 19820 Da    PI: 9.7927
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A01230.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000654264123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C+ C++ Fs+   L  H  +H
  Eucgr.A01230.1.p 42 YECKTCNRQFSSFQALGGHRASH 64
                      99**********99999998887 PP
2zf-C2H210.80.001591113123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ Cg  F     L  H+r+H
  Eucgr.A01230.1.p  91 HECSVCGLKFALGQALGGHMRKH 113
                       78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.8E-53466IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.24E-841113No hitNo description
PfamPF139124.7E-124266IPR007087Zinc finger, C2H2
SMARTSM003550.114264IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.5124269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
PfamPF139126.2E-991115IPR007087Zinc finger, C2H2
PROSITE profilePS501579.6691118IPR007087Zinc finger, C2H2
SMARTSM003550.2191113IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MKRTRDDYER MSLDMAKCLM LLSHGVNAEL KRAAVHQTED NYECKTCNRQ FSSFQALGGH  60
RASHKKPKLL QNKPGDCTKL ALGGTAETKM HECSVCGLKF ALGQALGGHM RKHRAELMSG  120
NMMNMDEFFG INSTVPVLNR SNSSSKRVMG LDLNLTPLEN DLKFLFGKMY PRTVAFS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A01230.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010068234.21e-121PREDICTED: zinc finger protein ZAT1
TrEMBLA0A059DEB61e-129A0A059DEB6_EUCGR; Uncharacterized protein
STRINGXP_010068234.11e-112(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-46C2H2 family protein