PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.A01143.1.p | ||||||||
Common Name | EUGRSUZ_A01143, LOC104435593 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | TCP | ||||||||
Protein Properties | Length: 207aa MW: 21680.5 Da PI: 7.9026 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 101.1 | 1.9e-31 | 47 | 119 | 7 | 66 |
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............s 66 + ++hTkv+gR+RR+R++a+caar+F+L++eLG+ +d++tieWLl+ a+p+i+++tg Eucgr.A01143.1.p 47 PARDRHTKVNGRGRRIRIPALCAARIFQLTRELGHRSDGETIEWLLRCAEPSIIAATGYgsmpadpitttvgA 119 5689*******************************************************44444444444440 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 25.035 | 48 | 102 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.8E-26 | 48 | 112 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MGSIVSPQDF PSSDQNSPPN LAAAAVEAPP PKPHRQVALS RKSTAAPARD RHTKVNGRGR 60 RIRIPALCAA RIFQLTRELG HRSDGETIEW LLRCAEPSII AATGYGSMPA DPITTTVGAL 120 PPSSTPASAP CPAQPLALAP PAAGHGAFPI SPPPDCRLDL SQPNGFDFSA GGCATNGYRH 180 MPFTALLLQP TATEEAEERQ QREILG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.A01143.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010046620.1 | 1e-147 | PREDICTED: transcription factor TCP11 | ||||
Swissprot | Q9SJK7 | 1e-38 | TCP11_ARATH; Transcription factor TCP11 | ||||
TrEMBL | A0A059DDZ6 | 1e-146 | A0A059DDZ6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010046620.1 | 1e-147 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15265 | 16 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37000.1 | 5e-38 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.A01143.1.p |
Entrez Gene | 104435593 |