PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A01053.1.p
Common NameEUGRSUZ_A01053, LOC104434780
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 451aa    MW: 48490.9 Da    PI: 6.243
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A01053.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.12.3e-3087143259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +DgynWrKYGqK+vkg+ef rsYYrCt+++Cpvkk+vers+  +++++ +Y geHnh 
  Eucgr.A01053.1.p  87 EDGYNWRKYGQKNVKGNEFVRSYYRCTHPNCPVKKQVERSR-SGRITDNIYLGEHNHA 143
                       7****************************************.9**************6 PP
2WRKY1061.9e-33261319159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dgy+WrKYGqK+vkg+++prsYYrC+sagCp+kk+ver+++d+k+v +tYeg+H+h+
  Eucgr.A01053.1.p 261 VNDGYRWRKYGQKMVKGNPNPRSYYRCSSAGCPAKKHVERASHDTKLVMTTYEGQHDHS 319
                       58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.1E-2780145IPR003657WRKY domain
PROSITE profilePS5081122.97481145IPR003657WRKY domain
SuperFamilySSF1182904.05E-2485145IPR003657WRKY domain
SMARTSM007748.1E-3586144IPR003657WRKY domain
PfamPF031064.3E-2487142IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-35247321IPR003657WRKY domain
SuperFamilySSF1182903.4E-29253321IPR003657WRKY domain
PROSITE profilePS5081135.726256321IPR003657WRKY domain
SMARTSM007744.7E-39261320IPR003657WRKY domain
PfamPF031064.4E-26262318IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MAIEESAPNE TGPEGVKPEN SPQNGGDTPQ PDQKSNSKES PGCGVGLQGV QSKEPLASEL  60
TPESVKHGSQ SGQEGSTPSI SYEKSSEDGY NWRKYGQKNV KGNEFVRSYY RCTHPNCPVK  120
KQVERSRSGR ITDNIYLGEH NHASPQKHLP VAVSFAVSIV EEKPEKPSPI STQDKSSEVK  180
REASHQVDDK KPPQLSVPTP ADVKPVVPAI VKVQDEIATD EDSPGSKRRK KDSCNTDIPS  240
GDKPTTEARV IVHTVSEVDI VNDGYRWRKY GQKMVKGNPN PRSYYRCSSA GCPAKKHVER  300
ASHDTKLVMT TYEGQHDHSV PPSRTIMPNP GGFNGHATTQ SGDVNIKSPD GETVSHSVGE  360
NASSASGSKS TDQSNGKAEE TSGTGDEVGD RTVLNNDLGP EDRISEQKED LSSTKSGDRD  420
PVHLDSVVNV MGENSHPPQQ PSSNAAAVQS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-3788322175WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A01053.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045954.10.0PREDICTED: probable WRKY transcription factor 58
SwissprotQ9SI378e-80WRKY1_ARATH; WRKY transcription factor 1
TrEMBLA0A059DDY80.0A0A059DDY8_EUCGR; Uncharacterized protein
STRINGXP_010045954.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79492639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.22e-85zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]