PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A01029.2.p
Common NameEUGRSUZ_A01029
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 499aa    MW: 56174.8 Da    PI: 5.5655
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A01029.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.81.9e-11109149445
                       S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       W ++E+ ll+++++++G g+W+ +a ++g  ++  qc+ +++
  Eucgr.A01029.2.p 109 WNADEEMLLLEGIEMYGFGNWAEVADHIG-SKSKSQCIAHYN 149
                       *****************************.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0250249.4E-14238496IPR016827Transcriptional adaptor 2
PROSITE profilePS5013511.0824592IPR000433Zinc finger, ZZ-type
SMARTSM002911.6E-114589IPR000433Zinc finger, ZZ-type
PfamPF005691.5E-94789IPR000433Zinc finger, ZZ-type
SuperFamilySSF578501.13E-1548112No hitNo description
CDDcd023352.00E-274997No hitNo description
PROSITE patternPS0135705178IPR000433Zinc finger, ZZ-type
SuperFamilySSF466893.21E-12102155IPR009057Homeodomain-like
PROSITE profilePS5129322.159104156IPR017884SANT domain
SMARTSM007171.0E-10105154IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-8109151IPR009057Homeodomain-like
PfamPF002493.4E-11109149IPR001005SANT/Myb domain
CDDcd001674.68E-11109151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009409Biological Processresponse to cold
GO:0016573Biological Processhistone acetylation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MGRSRAASRP ADEDPNQRSK KKKIASGPEN VDSASAVIGQ GNEEKGASYH CNYCNKDISG  60
KIRIRCATCP DFDLCIECFS VGAEINPHKS NHPYRVMDNL SFPLLCPGWN ADEEMLLLEG  120
IEMYGFGNWA EVADHIGSKS KSQCIAHYNA MYMNSPCWPL PDLSHIMGKN REELLAIAKG  180
QEELKEESSS VGEPLKEESA SSTKFKSMES LKEIPVHAPS SGSIAGKRGC NISHAKEEIK  240
DEESQINRSI GEKKPRISGD EGPSATEFSG YNFKRQEFEV EYDNDAEQLL ADMEFRDTDT  300
DAERELKLQV LRIYSKRLDE RKRRKDFILE RNLLYPDPFE KNLSAEEREI YKHFKVFTRF  360
HSKEEHEEFV KSIIEEHRIV KRIHELQDAR AAGCRTAAEA NKFIERKREK EAEGAQRMKE  420
ISQAGPSGKI FPKSSHVKVE PESSPQGLVR SSSSLQSSGK DATLTSLDTL HSSLDDWDIS  480
DFPGADLLSE TVRETSLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw2_C1e-37491645120Transcriptional adapter 2
6cw3_E1e-37491645120Transcriptional adapter 2
6cw3_G1e-37491645120Transcriptional adapter 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320325RKRRKD
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A01029.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045771.10.0PREDICTED: transcriptional adapter ADA2a
SwissprotQ75LL60.0TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A059DDW80.0A0A059DDW8_EUCGR; Transcriptional adapter
STRINGXP_010045781.10.0(Eucalyptus grandis)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]