PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.A00908.1.p | ||||||||
Common Name | EUGRSUZ_A00908, LOC104433653 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | FAR1 | ||||||||
Protein Properties | Length: 849aa MW: 97155.5 Da PI: 7.1653 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.4 | 8.6e-27 | 89 | 191 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 +fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+ +++ +ra +t+Cka+++vk+++dgkw+++++ Eucgr.A00908.1.p 89 SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYEKSfnrprarqskqdPDNATGRRACAKTDCKASMHVKRRSDGKWVIHTF 181 5******************************************9999999998776655444555999************************* PP FAR1 82 eleHnHelap 91 ++eHnHel p Eucgr.A00908.1.p 182 VKEHNHELLP 191 *******975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-24 | 89 | 191 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 7.2E-29 | 289 | 380 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.582 | 569 | 605 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 6.4E-6 | 577 | 604 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 4.5E-9 | 580 | 607 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 849 aa Download sequence Send to blast |
MDIDLRLPSG GHEKEEEEPH GIDNMLDGDE KLHNGDMVTT TLADLGDVSH ASDGGALNPP 60 TADMMEVKEY MNLEPLSGME FESHGEAYSF YQEYARSMGF NTAIQNSRRS KTSREFIDAK 120 FACSRYGTKR EYEKSFNRPR ARQSKQDPDN ATGRRACAKT DCKASMHVKR RSDGKWVIHT 180 FVKEHNHELL PAQAISEQTR KMYAAMARQF AEYKNVVGLK NDTRNPFEKG RNILLEGGDA 240 RILLEFFSQM QCSNSNFFHA VDLADDQRIR SLLWVDAKSR HDYSSFSDVI SFDTTYIRSK 300 YKMPLALFVG VNQHYQFMLL GCALLSDESA ATYSWLMQTW LKAVGGQHPK VIITDQDKTV 360 KTVISDVFHS SRHCFCLWQI WGKLSENLSH VIKRHDNFMA KFEKCVNRSW TEAEFEKRWW 420 KIINRCELRE DEWMHSLYED RRHWVPTFLK DAFFAGMCSI QRADSVNAFF DKYVHKKTTV 480 QEFVKMYEAI LQDRYEEEGK GESDTWSKQP LLKSPSPFEK SVSASYTHAV LKKFQVEVLG 540 AVACRPKEER QDETGTIFRV QDFEKDQDFT VTWNEMKSEI SCICRLFEYK GYLCRHALIV 600 LQMCGLSAIP SFYVLKRWTK DAKNRLLMTE ESEQVQSRVQ RYNDLCQRAM RLSEEGSLSQ 660 EAYSLASRAI EEAFGNCVGQ NTISKGLAEA GTSATHSLLC AEDDSQVRGM SKTNKKKNPT 720 KKRKVTSEPD IMTIGAQESL QQMEKLTPRA VTTLDSYYGT QQSVPGMVQL NLMAPTRDNY 780 YGSQQTIQGL GQLNSIAPSH DGYYTPQQSM HGLGQMDFFR SPGGFTYSIR DDSNVRAAQL 840 HEDASRHA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:17012604, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:18715961, ECO:0000269|PubMed:22634759}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00078 | ChIP-seq | Transfer from AT3G22170 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.A00908.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010044783.1 | 0.0 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
Refseq | XP_010044788.1 | 0.0 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
Refseq | XP_018727883.1 | 0.0 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
Swissprot | Q9LIE5 | 0.0 | FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
TrEMBL | A0A059DDJ6 | 0.0 | A0A059DDJ6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010044783.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM118 | 26 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 0.0 | far-red elongated hypocotyls 3 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.A00908.1.p |
Entrez Gene | 104433653 |