![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.A00588.1.p | ||||||||
Common Name | EUGRSUZ_A00588 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 306aa MW: 35144.1 Da PI: 8.732 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00015 | 19 | 37 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 Cg +F+ + +L++H++ H Eucgr.A00588.1.p 19 ECGATFKKPTYLRQHMQGH 37 7***************988 PP | |||||||
2 | zf-C2H2 | 15.3 | 5.8e-05 | 43 | 67 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 +kC+ dC+ s++rk++L rH H Eucgr.A00588.1.p 43 FKCSieDCSASYRRKDHLARHFLQH 67 89*******************7766 PP | |||||||
3 | zf-C2H2 | 20.7 | 1.1e-06 | 72 | 97 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp C+ksF + n+krH++ H Eucgr.A00588.1.p 72 FSCPvdGCNKSFAYQGNMKRHLNEiH 97 89********************9988 PP | |||||||
4 | zf-C2H2 | 16.2 | 3e-05 | 114 | 135 | 1 | 20 |
EEET..TTTEEESSHHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHi 20 ++C+ Cgk+F+ s L++H Eucgr.A00588.1.p 114 HVCSevGCGKVFKFASKLQKHE 135 789999***************6 PP | |||||||
5 | zf-C2H2 | 10.7 | 0.0016 | 148 | 169 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C C k Fs+ ++Lk H+r+ H Eucgr.A00588.1.p 148 CCECMKYFSNVDYLKDHMRLaH 169 999****************988 PP | |||||||
6 | zf-C2H2 | 14.3 | 0.00012 | 204 | 229 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ C + Fs ksnL++H + H Eucgr.A00588.1.p 204 FRCEveGCLRIFSIKSNLRQHVKAvH 229 89*******************99877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.141 | 15 | 42 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.2E-8 | 18 | 67 | No hit | No description |
SMART | SM00355 | 37 | 18 | 37 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 5.9E-6 | 18 | 43 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.743 | 43 | 70 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0093 | 43 | 67 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.3E-8 | 44 | 69 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 45 | 67 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.53E-9 | 53 | 109 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.7E-8 | 70 | 98 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 13.069 | 72 | 102 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.6E-4 | 72 | 97 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 74 | 97 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.8E-6 | 112 | 135 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 30 | 114 | 136 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.683 | 114 | 143 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.85 | 146 | 169 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 4.2 | 146 | 169 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 148 | 169 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 30 | 172 | 193 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.1E-6 | 185 | 226 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.64E-9 | 186 | 246 | No hit | No description |
PROSITE profile | PS50157 | 12.944 | 204 | 234 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0077 | 204 | 229 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 206 | 229 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.5E-4 | 228 | 258 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 27 | 235 | 261 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.683 | 235 | 266 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 237 | 261 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 306 aa Download sequence Send to blast |
MAQGVEGKEG AKANNTSEEC GATFKKPTYL RQHMQGHLLE TPFKCSIEDC SASYRRKDHL 60 ARHFLQHKGK IFSCPVDGCN KSFAYQGNMK RHLNEIHNDE EPSTSGECNS LKQHVCSEVG 120 CGKVFKFASK LQKHEDSYVK LETVEAFCCE CMKYFSNVDY LKDHMRLAHQ LVNCNICGTK 180 QLRKNIQRHL LTHEKKNSAD SEAFRCEVEG CLRIFSIKSN LRQHVKAVHL GVRPFVCGHK 240 DCGKKFAYKH VRDHHEKTGC HGDFEELDEQ FQSRPRGRRK RKCPTIESLL RKRVTLPNEL 300 DFLLD* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tf6_A | 1e-15 | 19 | 167 | 19 | 158 | PROTEIN (TRANSCRIPTION FACTOR IIIA) |
1tf6_D | 1e-15 | 19 | 167 | 19 | 158 | PROTEIN (TRANSCRIPTION FACTOR IIIA) |
5v3j_E | 5e-15 | 10 | 258 | 1 | 251 | Zinc finger protein 568 |
5v3j_F | 5e-15 | 10 | 258 | 1 | 251 | Zinc finger protein 568 |
5v3m_C | 5e-15 | 10 | 258 | 1 | 251 | Zinc finger protein 568 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 273 | 281 | RPRGRRKRK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.A00588.1.p |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010034379.1 | 0.0 | PREDICTED: transcription factor IIIA | ||||
Swissprot | Q84MZ4 | 1e-103 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | A0A059DCH8 | 0.0 | A0A059DCH8_EUCGR; Uncharacterized protein | ||||
STRING | XP_010034379.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4714 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72050.2 | 1e-106 | transcription factor IIIA |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.A00588.1.p |