PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A00580.1.p
Common NameEUGRSUZ_A00580
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 321aa    MW: 37066.7 Da    PI: 9.5357
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A00580.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.52.6e-066081223
                      EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                      +C+ Cg +F+ + +L++H++ H
  Eucgr.A00580.1.p 60 TCEECGATFKKPAYLRQHMQGH 81
                      6******************988 PP
2zf-C2H214.30.0001287111123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       +kC+  dC++s++rk++L +H   H
  Eucgr.A00580.1.p  87 FKCSieDCPTSYRRKDHLAHHFLQH 111
                       89*******************7766 PP
3zf-C2H2188.2e-06116141123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                       ++Cp   C+ksF  + n+krH +  H
  Eucgr.A00580.1.p 116 FSCPveGCNKSFAYQWNMKRHVSEiH 141
                       89*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015713.0065986IPR007087Zinc finger, C2H2
SMARTSM003550.0125981IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-86085IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.36E-960111No hitNo description
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.4E-786113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0687111IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.03787114IPR007087Zinc finger, C2H2
PROSITE patternPS00028089111IPR007087Zinc finger, C2H2
SuperFamilySSF576671.27E-698146No hitNo description
Gene3DG3DSA:3.30.160.601.2E-6114137IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.783116146IPR007087Zinc finger, C2H2
SMARTSM003553.6E-4116141IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280118141IPR007087Zinc finger, C2H2
SMARTSM0035551188211IPR015880Zinc finger, C2H2-like
SMARTSM0035519214235IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MQSRPLTRAE MRICFCAYIK KTRPKKSLIT SHIQSHHQDE AEAAMAQGVE VKEGAKANNT  60
CEECGATFKK PAYLRQHMQG HSLERPFKCS IEDCPTSYRR KDHLAHHFLQ HKGKIFSCPV  120
EGCNKSFAYQ WNMKRHVSEI HNDALPSTPG EFKSLKQHVG PEVGRGKVFK FASQLQNHED  180
SHGKSLIYEG VLCMKYFSNV DYLKEHVRSA HQLINCDICG TKQLRKNIQQ HLRTHEKKNP  240
ADSEAFRCVE GCLHIFSIHL KAIHLEVRPF KFWLLWVQGD YEELDEKFRS RARGGRKRKC  300
LTIESLLQKR VTLPGWVEKC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A3e-146320619155PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D3e-146320619155PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A00580.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034379.11e-167PREDICTED: transcription factor IIIA
SwissprotQ84MZ47e-83TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A059DCH40.0A0A059DCH4_EUCGR; Uncharacterized protein
STRINGXP_010034379.11e-167(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47142852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.23e-85transcription factor IIIA