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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.A00559.1.p | ||||||||
Common Name | EUGRSUZ_A00559 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | C2H2 | ||||||||
Protein Properties | Length: 246aa MW: 27960.1 Da PI: 8.6713 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.9 | 7.9e-05 | 19 | 37 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 Cg +F+ +++L++H++ H Eucgr.A00559.1.p 19 ECGATFKKPEYLRQHMQGH 37 7***************988 PP | |||||||
2 | zf-C2H2 | 21.4 | 6.7e-07 | 72 | 97 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp C+ksF + n+krH++ H Eucgr.A00559.1.p 72 FSCPidGCDKSFAYQGNMKRHLNEiH 97 89********************9988 PP | |||||||
3 | zf-C2H2 | 14.6 | 9.7e-05 | 114 | 138 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp Cgk+F+ L++H +H Eucgr.A00559.1.p 114 HVCPevGCGKVFKFALKLRKHEDSH 138 79*******************9888 PP | |||||||
4 | zf-C2H2 | 11.2 | 0.0012 | 148 | 169 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C C k Fs+ ++Lk H+r+ H Eucgr.A00559.1.p 148 CCECMKYFSNVDYLKDHMRSaH 169 999****************999 PP | |||||||
5 | zf-C2H2 | 19.6 | 2.4e-06 | 194 | 219 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ C + Fs+ksnL++H + H Eucgr.A00559.1.p 194 FRCEveGCLRIFSTKSNLRQHVKAvH 219 89*******************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.536 | 15 | 42 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.09E-7 | 18 | 67 | No hit | No description |
SMART | SM00355 | 37 | 18 | 37 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.7E-6 | 18 | 41 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene3D | G3DSA:3.30.160.60 | 3.9E-7 | 42 | 69 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 3.1 | 43 | 67 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.829 | 43 | 70 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 45 | 67 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.85E-8 | 54 | 109 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.0E-8 | 70 | 98 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 1.5E-4 | 72 | 97 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.965 | 72 | 102 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 74 | 97 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.9E-5 | 112 | 138 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.09E-5 | 112 | 166 | No hit | No description |
SMART | SM00355 | 0.013 | 114 | 138 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.452 | 114 | 143 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 116 | 138 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.5 | 146 | 169 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.307 | 146 | 174 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 148 | 169 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.52E-9 | 178 | 234 | No hit | No description |
SMART | SM00355 | 4.2E-4 | 194 | 219 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.5E-7 | 194 | 219 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 13.277 | 194 | 224 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 196 | 219 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MAQGVEGKKG AKANNTSEEC GATFKKPEYL RQHMQGHSLE TPFKCSVEDC SASYRRTDHL 60 ACHFLQHKGK IFSCPIDGCD KSFAYQGNMK RHLNEIHNDE EPSTSGECKS LKQHVCPEVG 120 CGKVFKFALK LRKHEDSHVK LETVEAFCCE CMKYFSNVDY LKDHMRSAHQ LLRKNIQQHL 180 LMHEKKNSAD SEAFRCEVEG CLRIFSTKSN LRQHVKAVHL GVRPFVCGHK DCGKKCAYKH 240 VILRS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tf6_A | 8e-16 | 19 | 164 | 19 | 155 | PROTEIN (TRANSCRIPTION FACTOR IIIA) |
1tf6_D | 8e-16 | 19 | 164 | 19 | 155 | PROTEIN (TRANSCRIPTION FACTOR IIIA) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.A00559.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010034379.1 | 1e-157 | PREDICTED: transcription factor IIIA | ||||
Swissprot | Q84MZ4 | 9e-73 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | A0A059DCN5 | 0.0 | A0A059DCN5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010034379.1 | 1e-156 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.2 | 4e-75 | transcription factor IIIA |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.A00559.1.p |