PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A00553.1.p
Common NameEUGRSUZ_A00553
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 454aa    MW: 51348.3 Da    PI: 8.5133
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A00553.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012114136123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y C++Cg + s ks+ ++Hi++H
  Eucgr.A00553.1.p 114 YYCEYCGICRSKKSLITSHIQSH 136
                       89********************6 PP
2zf-C2H2193.9e-06160181223
                       EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       +C+ Cg +F+ + +L++H++ H
  Eucgr.A00553.1.p 160 TCEECGATFKKPAYLRQHMQGH 181
                       6******************988 PP
3zf-C2H215.16.7e-05187211123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       +kC+  dC+ s++rk++L rH   H
  Eucgr.A00553.1.p 187 FKCSieDCPASYRRKDHLARHFLQH 211
                       89*******************7766 PP
4zf-C2H2201.9e-06216241123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                       ++Cp   C+ksF  + n+krH++  H
  Eucgr.A00553.1.p 216 FSCPvdGCNKSFAYQGNMKRHLNEiH 241
                       89********************9988 PP
5zf-C2H220.21.6e-06258282123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       y+Cp   Cgk+F+  s L++H  +H
  Eucgr.A00553.1.p 258 YVCPevGCGKVFKFASKLRKHEDSH 282
                       9********************9888 PP
6zf-C2H216.72.1e-05348373123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                       ++C    C  +Fs+ksnL++H +  H
  Eucgr.A00553.1.p 348 FRCDveGCLSTFSTKSNLRQHVKAvH 373
                       899999***************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035518114136IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.663114142IPR007087Zinc finger, C2H2
PROSITE profilePS5015713.006159186IPR007087Zinc finger, C2H2
SMARTSM003550.012159181IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.7E-10160211No hitNo description
Gene3DG3DSA:3.30.160.602.9E-8160185IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280161181IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.6E-9186213IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.411187214IPR007087Zinc finger, C2H2
SMARTSM003550.0069187211IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280189211IPR007087Zinc finger, C2H2
SuperFamilySSF576671.35E-8197253No hitNo description
Gene3DG3DSA:3.30.160.609.4E-8214242IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.6E-4216241IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.069216246IPR007087Zinc finger, C2H2
PROSITE patternPS000280218241IPR007087Zinc finger, C2H2
SuperFamilySSF576671.29E-5256310No hitNo description
Gene3DG3DSA:3.30.160.606.1E-7256282IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.032258287IPR007087Zinc finger, C2H2
SMARTSM003550.0026258282IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280260282IPR007087Zinc finger, C2H2
PROSITE profilePS501578.995290313IPR007087Zinc finger, C2H2
SMARTSM003551.5290313IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280292313IPR007087Zinc finger, C2H2
SMARTSM0035529316337IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.0E-9329390No hitNo description
Gene3DG3DSA:3.30.160.602.8E-7329370IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.009348378IPR007087Zinc finger, C2H2
SMARTSM003558.2E-4348373IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280350373IPR007087Zinc finger, C2H2
SMARTSM0035527379405IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280381405IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MIRFVLDGSR FYPSYMLTLR LGLDVGNDSE VKPLPVRGSN LVPVGVYWAG LNLGPSRSRA  60
QNDTDPYDES SVISSNCLGF EVCSATSARA GARAMGGEES CEKPGPVFRD IRRYYCEYCG  120
ICRSKKSLIT SHIQSHHQDE VEAAMAQGVE GKEGAKANNT CEECGATFKK PAYLRQHMQG  180
HSLERPFKCS IEDCPASYRR KDHLARHFLQ HKGKIFSCPV DGCNKSFAYQ GNMKRHLNEI  240
HNDEEPSTSG ECKSLKQYVC PEVGCGKVFK FASKLRKHED SHVKLETVEA FCCECMKYFS  300
NVDYLKEHMR SAHQLVNCDT CGTKQLRKNI QRHLRTHEKK NSADSEAFRC DVEGCLSTFS  360
TKSNLRQHVK AVHLEVRPFV CGHKDCGKKF AYKHVRDHHE KTGCHVYTPG DFEELDEQFR  420
SRPRGGRKRK CPTIESLLRK RVTLPNELAF LSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A3e-1816140219190Aart
2i13_B3e-1816140219190Aart
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1421429RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A00553.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034379.10.0PREDICTED: transcription factor IIIA
SwissprotQ84MZ41e-131TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A059DCN00.0A0A059DCN0_EUCGR; Uncharacterized protein
STRINGXP_010034379.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47142852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-133transcription factor IIIA