PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS759259.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 336aa    MW: 38208.9 Da    PI: 7.6303
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS759259.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.99.7e-10279306431
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC. CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkas 31 
                   +h e+Er+RRd++N++f  Lr+++P++ 
  EcS759259.10 279 SHVEAERQRRDKMNQRFYALRSVVPTCQ 306
                   799***********************83 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.9E-3639209IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474595.63E-9268310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.41275336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-9279305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-7279306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.41E-7280313No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
YIRETSWLEL NNLLLMEELA SCASSSLLFP FHHKASPTLQ QIVHLILQTR TEEWIYFIFW  60
RPSRDKHGCL VLTWADGHFQ GTTRDPFTSK HTTKRVLEET QCLNDKFAHS SDIGDPEWYY  120
IFSVARSYSS EHGLLGKAFR SGGHVWLNGE DRHELEMYEC DERVKEARMY GIKSIACISI  180
PNGSGVLELG SSEIIKEDWS LVHLTKCLFP SRFWNPPVDP RGENQSNEES ALADASKRPF  240
SKPVGTAYHN ISKKSYRKKI VDDDDKESSL SPSLSGPLSH VEAERQRRDK MNQRFYALRS  300
VVPTCQGWTR RLSLLIPSTT SRNSGPGSTH GSPSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A9e-22382098192Transcription factor MYC3
4rqw_B9e-22382098192Transcription factor MYC3
4rs9_A9e-22382098192Transcription factor MYC3
4yz6_A9e-22382098192Transcription factor MYC3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058361.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A059C2860.0A0A059C286_EUCGR; Uncharacterized protein
STRINGXP_010058362.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.12e-30bHLH family protein