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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS755020.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | CPP | ||||||||
Protein Properties | Length: 411aa MW: 43669.8 Da PI: 6.5817 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 51.9 | 1.5e-16 | 10 | 49 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+C+C dCkN e EcS755020.10 10 KHNKGCHCKKSGCLKKYCECFQANILCSENCRCMDCKNFE 49 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 19.866 | 1 | 50 | IPR005172 | CRC domain |
SMART | SM01114 | 1.0E-19 | 10 | 51 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 8.7E-13 | 13 | 48 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MQEDAGALGK HNKGCHCKKS GCLKKYCECF QANILCSENC RCMDCKNFEG SEERQALFHG 60 DHANNMAYIQ QAANAAITGA VGSSGFASPP LSKKKKGQEL FFGSNSTVKD PSIQRLGQFP 120 QPNNTKATAP FSLSSAPVTH GVSNTLSAPS KCTYRSLLAD IIQPQDVKEL CSVLVVLSGE 180 VAKTLAEEKN AKEKQVADQT EASLASSTQD RTQSLKNPDG GKTAADNCSS SSQVDKSGHE 240 ESVSDSAEAP NGRPVSPGTL ALMCDEQDTM FMAAASPSGL MGHDCNSSSQ VSHGQGITEV 300 YAEQERIVLA KVRDCLNKLI TFGEIKETKY SSLARTELGL QKDPICNGGA NGKIDTGHQP 360 WLESNSIGRT SVPPPLSTQV VSTAVSTSRT DNSNMSRALE NGSIQPKVEQ I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 7e-15 | 10 | 59 | 83 | 132 | Protein lin-54 homolog |
5fd3_B | 7e-15 | 10 | 59 | 83 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00045 | PBM | Transfer from AT4G29000 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010050570.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X1 | ||||
Swissprot | Q9SZD1 | 1e-131 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A059CP02 | 0.0 | A0A059CP02_EUCGR; Uncharacterized protein | ||||
STRING | XP_010050570.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1783 | 28 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-133 | Tesmin/TSO1-like CXC domain-containing protein |