PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS754314.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 639aa    MW: 71658.2 Da    PI: 4.8001
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS754314.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.70.000494624931955
                   HHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  19 afeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                   +f  Lr+++P+          +Ka+iL  ++ Y+++L+
  EcS754314.10 462 KFLVLRSMIPSiE------EIDKASILDDTIMYLRELE 493
                   7889*******55......8***************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.9E-5015190IPR025610Transcription factor MYC/MYB N-terminal
SMARTSM003530.0083452498IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.93E-4457497No hitNo description
SuperFamilySSF474592.62E-7458506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-7461505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MATGVEGNEG VPANLRKQLA VAVRSIQWSY AIFWTLSATK QGVLQWGDGY YNGDIKTRKT  60
VQAVELKPDK IGLQRSEQLR DLYESLLEGE TDAQNKRPSA ALSPEDLTDE EWYYLVCMSF  120
VFNPGEGLPG RALADGQTIW LCNAQYADSK VFSRSLLAKT VVCFPYLGGV IELGVTELVP  180
EDPSLLQHIK VSLLDFSKPI CSEKSSSIPQ NGDADKEPMC AKVDCGMVDE LVLENLYSPA  240
QEIKFDPEKI SEFCESIPKE LDMDSPDECS NGCEHNYQTE DSFMVDGMNG GASQVQSWHF  300
VDDDFSNGVQ GSINSSDCIS EAIVNQDKYI SSPRRENAKN SHLKELQECN HSKLSSLDLG  360
PDDISHYRRT ISAVLRNPDQ LPETRCICSC GCKSSFVRWR MVEVHKPRAH QETLKKILFK  420
VPLMHRGQAL KSELQNGVES LLGDVDFCAG HILSTKKKEH EKFLVLRSMI PSIEEIDKAS  480
ILDDTIMYLR ELEARVEELE SCMDSTDLEG KVTRKKFPDM IEQTSDNCKK RWINKRKASD  540
IDETDAELDR NAQGDGLQAD VKVNIKEQEV SIEMKCPYRE YLLLDILEAV NNLHLDAYSI  600
QSSTLDGALK LTLKSKFRGA AVSPAGMIKQ VLWKITGKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A4e-151518948227Transcription factor MYC3
4ywc_A4e-151518948227Transcription factor MYC3
4ywc_B4e-151518948227Transcription factor MYC3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053704.10.0PREDICTED: transcription factor EGL1
TrEMBLA0A059CIL20.0A0A059CIL2_EUCGR; Uncharacterized protein
STRINGXP_010053704.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25922867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.31e-154bHLH family protein