PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS744841.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 189aa    MW: 22126.9 Da    PI: 11.1308
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS744841.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.65.4e-324111850128
           NAM  50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                   k+k+++ ewyfFs  dkky +g+++nrat++gyWk+tgkd+++++  +++vg+kktLv+++grap+g++t+Wvmheyrl
  EcS744841.10  41 KLKSRDLEWYFFSVLDKKYGNGSKTNRATENGYWKTTGKDRAIYH-YSRTVGMKKTLVYHNGRAPRGQRTNWVMHEYRL 118
                   5566778**************************************.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100535.8911141IPR003441NAC domain
SuperFamilySSF1019411.57E-3942141IPR003441NAC domain
PfamPF023658.6E-1644118IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MIALKFFVVV FDLVVMTWRA ISLAAPSSFA GTSAKRQDKS KLKSRDLEWY FFSVLDKKYG  60
NGSKTNRATE NGYWKTTGKD RAIYHYSRTV GMKKTLVYHN GRAPRGQRTN WVMHEYRLTD  120
EELAKAGIPQ DAFVLCRIFQ KSGSGPKTGS NMVHRSLRRN GRMMMWPCFL IRSKWWVFMM  180
NMLRQMTWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-294814775174NAC domain-containing protein 19
3swm_B1e-294814775174NAC domain-containing protein 19
3swm_C1e-294814775174NAC domain-containing protein 19
3swm_D1e-294814775174NAC domain-containing protein 19
3swp_A1e-294814775174NAC domain-containing protein 19
3swp_B1e-294814775174NAC domain-containing protein 19
3swp_C1e-294814775174NAC domain-containing protein 19
3swp_D1e-294814775174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010032131.11e-74PREDICTED: NAC domain-containing protein 78
SwissprotQ84K006e-63NAC78_ARATH; NAC domain-containing protein 78
TrEMBLA0A059ADS62e-73A0A059ADS6_EUCGR; Uncharacterized protein
STRINGXP_010032131.14e-74(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17802880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.14e-65NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Gladman NP,Marshall RS,Lee KH,Vierstra RD
    The Proteasome Stress Regulon Is Controlled by a Pair of NAC Transcription Factors in Arabidopsis.
    Plant Cell, 2016. 28(6): p. 1279-96
    [PMID:27194708]
  6. Tang Y,Zhao CY,Tan ST,Xue HW
    Arabidopsis Type II Phosphatidylinositol 4-Kinase PI4Kγ5 Regulates Auxin Biosynthesis and Leaf Margin Development through Interacting with Membrane-Bound Transcription Factor ANAC078.
    PLoS Genet., 2016. 12(8): p. e1006252
    [PMID:27529511]