 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
EcS738371.20 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
| Family |
B3 |
| Protein Properties |
Length: 118aa MW: 13684.7 Da PI: 10.018 |
| Description |
B3 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| EcS738371.20 | genome | ECGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 68.5 | 9e-22 | 28 | 115 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83
f+kvlt sd++++g +++ k+a+e+ +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +g ++vF
EcS738371.20 28 FCKVLTASDTSTHGGFSVLMKHATEClppldMNQSTPTQELVARDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGNSFVFL 115
99****************************9445555669***********************************************6 PP
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4ldv_A | 3e-54 | 5 | 116 | 101 | 212 | Auxin response factor 1 |
| 4ldw_A | 3e-54 | 5 | 116 | 101 | 212 | Auxin response factor 1 |
| 4ldw_B | 3e-54 | 5 | 116 | 101 | 212 | Auxin response factor 1 |
| 4ldx_A | 3e-54 | 5 | 116 | 101 | 212 | Auxin response factor 1 |
| 4ldx_B | 3e-54 | 5 | 116 | 101 | 212 | Auxin response factor 1 |
| 4ldy_A | 3e-54 | 5 | 116 | 101 | 212 | Auxin response factor 1 |
| 4ldy_B | 3e-54 | 5 | 116 | 101 | 212 | Auxin response factor 1 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
