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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS738306.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 110aa MW: 12745.5 Da PI: 11.0568 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.7 | 8.7e-16 | 64 | 105 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +T++E+el+++++ G++ W+ Ia+ ++ gRt++++k++w++ EcS738306.10 64 VFTPQEEELIIRLHVIIGSR-WSIIAQQLP-GRTDNDVKNHWNT 105 69******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.27E-5 | 8 | 59 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.213 | 8 | 56 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-10 | 27 | 63 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.05E-21 | 42 | 109 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.241 | 57 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-13 | 61 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-14 | 64 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-21 | 64 | 110 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.17E-10 | 65 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence Send to blast |
MRPPCTNKTN NRRGPWATGE DPRTIVQGTG NWGLAPRKAG LRRCGKSCKP RWSNYYQPDS 60 KHEVFTPQEE ELIIRLHVII GSRWSIIAQQ LPGRTDNDVK NHWNTKLRKK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-22 | 13 | 110 | 7 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for anther development and early tapetal function during microspore maturation (PubMed:18397379, PubMed:21957980). Regulates callose dissolution required for microspores release from the tetrads (PubMed:18397379). {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010039154.1 | 8e-75 | PREDICTED: transcription factor MYB35 | ||||
Swissprot | Q9LSI7 | 4e-43 | MYB35_ARATH; Transcription factor MYB35 | ||||
TrEMBL | A0A059A6K0 | 2e-73 | A0A059A6K0_EUCGR; Uncharacterized protein | ||||
STRING | XP_010039154.1 | 3e-74 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 2e-45 | MYB family protein |
Publications ? help Back to Top | |||
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