PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS736265.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 202aa    MW: 23230.8 Da    PI: 9.7495
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS736265.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.4e-131261555
                  HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS
           HLH  5 hnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55
                   +  Er+RR++++  f+eL +l+P+ +   p +K ls  + L +A +YI+sLq
  EcS736265.10 12 RKRTERNRRNQMKALFSELHSLVPQqS---PTEKtLSLPDQLGEAANYIRSLQ 61
                  5678*********************55...88888*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.455760IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-13977IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-111274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-91361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00211366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.64E-71665No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MESKPGSSRP DRKRTERNRR NQMKALFSEL HSLVPQQSPT EKTLSLPDQL GEAANYIRSL  60
QVKVEKMREQ KEQLLEVGKI NTTMNSGPMI GFKSPEIRIW NNKSILEVVL VTGLDGQFMF  120
NETVQVIHEE GADIVNASSS YVGDAMLHTI HAKVRISLYF EPKMVRNCTF RTKSLLQNID  180
FWNSFVETIN KISLWRDVMK IC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010057407.11e-110PREDICTED: uncharacterized protein LOC104445269 isoform X1
RefseqXP_018728570.11e-110PREDICTED: uncharacterized protein LOC104445269 isoform X2
SwissprotF4JIJ74e-35BH162_ARATH; Transcription factor bHLH162
TrEMBLA0A059C7W91e-109A0A059C7W9_EUCGR; Uncharacterized protein
STRINGXP_010057407.11e-109(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-37bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]