PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS729352.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family FAR1
Protein Properties Length: 669aa    MW: 77154.8 Da    PI: 8.7937
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS729352.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.94.7e-20592391
          FAR1  3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
                  Y +YA + GF vrk +  ++ ++g++t+rtfvC++eg++ ++++ +++++ +r   r+gC a++k k ++++++ev++ ++eHnH+++p
  EcS729352.10  5 YVAYAITKGFGVRKGNLVRN-TKGKVTRRTFVCNCEGYSINSSDVEKEKKFERLDIRCGCLAHIKFKVDNNDVFEVIEYNSEHNHAFVP 92
                  99***************999.7777**************999999899999**********************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.7E-18592IPR004330FAR1 DNA binding domain
PfamPF105513.3E-35213307IPR018289MULE transposase domain
PROSITE profilePS509668.407479528IPR007527Zinc finger, SWIM-type
PfamPF044344.6E-4501525IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
AYNKYVAYAI TKGFGVRKGN LVRNTKGKVT RRTFVCNCEG YSINSSDVEK EKKFERLDIR  60
CGCLAHIKFK VDNNDVFEVI EYNSEHNHAF VPENQRHMIR CGRIMSETCK GVLVDMMKAG  120
IGGTTSYKFL ANEAGGSKNL GFNLRDCQNF LQTTRSNMIT GGDCQKLLNH FHSMEQQNPM  180
FSYAVQVDQD GRLTNIFWRD SLSKFDYDCF GDVLVFDTTY RTNRYNMVCA PFVGVNHHWK  240
NVLFGCAFLA DETAESFIWL FDAFLKSMGN KAPKTMFTDQ DQAMAKAITM VFPNTQHRLC  300
TWHIMKNANE NIPHLYRDSG FRDKYFLALM YRCKSEDEFE STWKEMEEKW NTEDNSWLRR  360
LYGLRHKWSL AFGRDIFTCG IRSSQRSEST NNVFQKLASK TSTLIQFVHY YEEQVKHMRE  420
VESQDDYSCR GMPRLTIPHD ILMHAASVYT RSIFTRFNDE FSLSVSENIA SSTFDGSIYS  480
FTLKSRRSQR EHIVKFDPAN CSIFCECKLF ESKGWLCHHA LKVLSENMSI KCIPAAYVLK  540
RWTKGAKEGI VSSEFQQMSL DSSKFNRFSM LMQQSFEVMS LGVEDDNTMR IVSKHMQNAK  600
TEISSYKSNV IVTDDATNED NETSVCNISV LDPLRKKGKG ITYGRLKSSS EKKKKKSKKG  660
TPPIPNESR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1634655RKKGKGITYGRLKSSSEKKKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018716557.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 9 isoform X2
RefseqXP_018716558.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X3
TrEMBLA0A059AXR10.0A0A059AXR1_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010028196.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-107FAR1-related sequence 5