PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS727201.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

FAR1

Protein Properties

Length: 274aa MW: 31447.7 Da PI: 7.056

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS727201.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.7	6.1e-21	12	96	3	91
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Y +YA GF vrk ++ k+ r+geit+rtf C++eg++ +++++ +++ +r+e r+gC a++k k + ++++ev++ ++eHnH+++p EcS727201.10 12 YVAYAIGKGFGVRKGHTVKN-RKGEITRRTFLCNCEGYSVTSSDQ--EKKFERPEVRCGCPAHIKFKVD-NDVYEVIEYVSEHNHAFVP 96 99************9999.7788**********999877..9999*************9.9************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.5E-19	12	96	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.7E-15	217	273	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
GFSNEVEAYH KYVAYAIGKG FGVRKGHTVK NRKGEITRRT FLCNCEGYSV TSSDQEKKFE 60 RPEVRCGCPA HIKFKVDNDV YEVIEYVSEH NHAFVPEDQK HLIRCGRMIS DTCKGVLSDM 120 MKAGIGGTMA YKFLANEAGG SKNLGFILRD CQNFLQTESN KIMEGGDCQQ LLNHFHRMQM 180 QNPMFFYAVQ VDQHGRLTNL FWRDSLSKFD YDCFGDVLVF DSTYRTNRYS LICAPFVGVN 240 HHWKNTVFGC AFLLDETAES FIWLFNVFLE SMGD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010056981.1	1e-164	PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A059C3I9	1e-165	A0A059C3I9_EUCGR; Uncharacterized protein (Fragment)
STRING	XP_010027018.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-58	FAR1-related sequence 5