PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS723945.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family FAR1
Protein Properties Length: 396aa    MW: 45962.3 Da    PI: 7.9634
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS723945.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.31.5e-1923106390
          FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                   Y +YA   GF vrk++  ++ r+geit++tfvC++ g++ +++++  +++ +r+e r+gC a++k k + +g +ev++ ++ HnH++ 
  EcS723945.10  23 YVAYAIGKGFGVRKDNLLRN-RKGEITRQTFVCNCAGHPINSSDQ--EKKYHRSEVRCGCPARIKFKVD-NGIYEVIEYVSTHNHPFI 106
                   99***************999.7788**************999877..89999****************9.***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.4E-1723106IPR004330FAR1 DNA binding domain
PfamPF105511.0E-32228322IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MEKDYEFAIG TIFSNELEAY HTYVAYAIGK GFGVRKDNLL RNRKGEITRQ TFVCNCAGHP  60
INSSDQEKKY HRSEVRCGCP ARIKFKVDNG IYEVIEYVST HNHPFIPEGQ KHMIRCGRMI  120
SDTCKGVIVD MIKAGIGGTS TYKFLANEAG GSKNLGFNLR DCQNFLQTKR SNDISGGDCQ  180
NVLNHFHRMQ MENPMFFYAV QVDHDGKMTN IFWRDSLSKY DYDCFGDVLV FDTTYRINIY  240
NLICAPFVGV NHHWKNILFG CALLLDETAE SFIWLFEVFL KSMGNKAPKT IFTDQDQAMA  300
KAIRIMFPNT QHRLCTWHIG KNAHQNIPDL YRNPGFKDKY FSTLMYRCRS EDEFESTWKE  360
MEDEWGTKNN NWLQRLYNLR HKWSLAFSGD TFTCGI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010056981.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A059C3I90.0A0A059C3I9_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010056981.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-77FAR1-related sequence 5