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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS722803.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 174aa MW: 20572.7 Da PI: 7.5419 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 144.3 | 6.6e-45 | 12 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFh +deel+ +yLk+k+ g++ + ++i+e+d +k+ePw+L + + ++ke++f+++ ++ky ++kr+nr+t +gyWk t k+++++s EcS722803.10 12 LPPGFRFHASDEELLLRYLKPKILGQPdEPYYNIIPEIDACKFEPWELLHifGHMFNSKELFFYCCVKRKYLKSKRANRTTVAGYWKVTSKERRIMS 108 79************************96556678**************74343334779************************************** PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++l+g+kktLvfy+gr p+g++t+Wvmhey+l EcS722803.10 109 EdTNQLIGIKKTLVFYEGRLPEGKRTNWVMHEYHL 143 967778****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-47 | 8 | 148 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.713 | 12 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-23 | 13 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MEDTISEVMS LLPPGFRFHA SDEELLLRYL KPKILGQPDE PYYNIIPEID ACKFEPWELL 60 HIFGHMFNSK ELFFYCCVKR KYLKSKRANR TTVAGYWKVT SKERRIMSED TNQLIGIKKT 120 LVFYEGRLPE GKRTNWVMHE YHLNSKLLGD NHEEGEVTFW LSFICTTQSV INNI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-32 | 12 | 143 | 20 | 145 | NAC domain-containing protein 19 |
3swm_B | 1e-32 | 12 | 143 | 20 | 145 | NAC domain-containing protein 19 |
3swm_C | 1e-32 | 12 | 143 | 20 | 145 | NAC domain-containing protein 19 |
3swm_D | 1e-32 | 12 | 143 | 20 | 145 | NAC domain-containing protein 19 |
3swp_A | 1e-32 | 12 | 143 | 20 | 145 | NAC domain-containing protein 19 |
3swp_B | 1e-32 | 12 | 143 | 20 | 145 | NAC domain-containing protein 19 |
3swp_C | 1e-32 | 12 | 143 | 20 | 145 | NAC domain-containing protein 19 |
3swp_D | 1e-32 | 12 | 143 | 20 | 145 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010041524.1 | 1e-107 | PREDICTED: protein NTM1-like 9 | ||||
TrEMBL | A0A059DB68 | 3e-83 | A0A059DB68_EUCGR; Uncharacterized protein | ||||
STRING | XP_010030908.1 | 1e-110 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM190 | 28 | 276 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24590.2 | 2e-41 | TCV-interacting protein |