PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

M-type_MADS

Protein Properties

Length: 249aa MW: 28334.6 Da PI: 10.0875

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS670027.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	48.7	9.5e-16	10	51	2	43
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+s r f kR++g++KK ELS+LC+++++ i++s+ EcS670027.10 10 YIANDSSRRAAFKKRKKGLMKKVGELSTLCGINACAIVYSPY 51 599*************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	5.89E-24	1	85	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.7E-22	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	17.128	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00266	7.01E-21	2	86	No hit	No description
PRINTS	PR00404	9.3E-8	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.2E-16	11	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.3E-8	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0043078	Cellular Component	polar nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MTRRKVKLEY IANDSSRRAA FKKRKKGLMK KVGELSTLCG INACAIVYSP YDRQPDLWPP 60 SRVAVQRIIS RFKEMPDMEQ SKKMVSQEAY LRQRITRAND QLKKHSKENR EREVTKMMFN 120 ILTSTFTGTA PVWPSLRVMD LHDLGWVVDQ YCKDVVKRSE NLKEALGISG SEVAAPLPPP 180 PHVPTEEYPE TEGVGQVNTG VQKRPWFLNL ANPPEPNVPT FFGNELMLLP FGGNPNNNTT 240 NNPQNVVWP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	24	RRKVKLEYIANDSSRRAAFKKRK
2	21	25	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00553	DAP	Transfer from AT5G48670	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010046161.1	1e-149	PREDICTED: agamous-like MADS-box protein AGL80
Swissprot	Q9FJK3	5e-51	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	A0A059D3M6	1e-149	A0A059D3M6_EUCGR; Uncharacterized protein (Fragment)
STRING	XP_010046161.1	1e-148	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM70	28	415

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	2e-48	AGAMOUS-like 80

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]