PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS632340.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 91aa MW: 10358.8 Da PI: 7.4401 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.3 | 1.4e-18 | 2 | 78 | 18 | 98 |
--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 18 lpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 lp fae+h +g++ ++l++++g++W v++ yr+++ l++GW +F +n+L+egD++vF+l++ +e l v+vfr EcS632340.10 2 LPSCFAEKHlNGVSG---FIKLQSTDGKQWPVRCLYRGGR--AKLSQGWYDFSLENNLEEGDVCVFELMRAREVVLQVTVFR 78 8999*****877743...5***************665555..66*************************9988889999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 9.29E-20 | 1 | 78 | No hit | No description |
PROSITE profile | PS50863 | 15.002 | 1 | 80 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-16 | 1 | 78 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.09E-21 | 1 | 78 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.3E-21 | 1 | 78 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 4.7E-9 | 1 | 80 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
YLPSCFAEKH LNGVSGFIKL QSTDGKQWPV RCLYRGGRAK LSQGWYDFSL ENNLEEGDVC 60 VFELMRAREV VLQVTVFRVV EEGGLLSHHG R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 2e-38 | 1 | 81 | 65 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 2e-38 | 1 | 81 | 65 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010066068.1 | 2e-60 | PREDICTED: B3 domain-containing transcription factor VRN1 | ||||
Swissprot | Q8L3W1 | 3e-38 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A059BCA8 | 2e-59 | A0A059BCA8_EUCGR; Uncharacterized protein | ||||
STRING | XP_010066068.1 | 7e-60 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1124 | 28 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-40 | B3 family protein |
Publications ? help Back to Top | |||
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