![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EcS585404.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 225aa MW: 25645.9 Da PI: 7.3118 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 63.5 | 3.4e-20 | 35 | 114 | 13 | 98 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++l +pkkfae+ +k + ++l+ +sg +W+v ++ +++ GW++Fvk++ L+ +D++vF+++g+s+f +v vf+ EcS585404.10 35 HQQLAIPKKFAENLRSK--LPENVVLKGPSGATWKVGT--VADDENLLFKHGWQDFVKDHALEKNDILVFRYNGESSF--NVLVFN 114 678********777655..6678***************..999999****************************9999..777775 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 14.762 | 23 | 116 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.71E-22 | 24 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.15E-19 | 25 | 114 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.9E-24 | 25 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 6.5E-17 | 26 | 116 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-17 | 35 | 113 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 225 aa Download sequence Send to blast |
QMEGTCKECK SWEEEIYWTH FHSIHFCQFL QGDFHQQLAI PKKFAENLRS KLPENVVLKG 60 PSGATWKVGT VADDENLLFK HGWQDFVKDH ALEKNDILVF RYNGESSFNV LVFNQHSLCE 120 KEAAYFHKRC SHNPTDRECG TKRKLGDSSV EAMHTPVSHD VKRTLTEDPW EDRTVTVADR 180 NILSQAKASE NLIEAGASGK PRNKKATPKK KLSVAFDCLE EKPGT |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00468 | DAP | Transfer from AT4G33280 | Download |
![]() |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010059786.1 | 1e-164 | PREDICTED: B3 domain-containing protein REM16 isoform X4 | ||||
Swissprot | Q8RYD1 | 2e-46 | REM16_ARATH; B3 domain-containing protein REM16 | ||||
TrEMBL | A0A059BJD0 | 1e-162 | A0A059BJD0_EUCGR; Uncharacterized protein | ||||
STRING | XP_010059782.1 | 1e-161 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10428 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G33280.1 | 1e-48 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|