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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS581303.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 133aa MW: 14564.6 Da PI: 8.7892 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.2 | 2.9e-20 | 5 | 51 | 5 | 51 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ++s ++tf+kRrn ++KKA+ LS LCdaev +i+fs tg+lyeyss EcS581303.10 5 SSSSDHITFAKRRNWLMKKAKDLSQLCDAEVGIIVFSCTGQLYEYSS 51 678889***************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 19.063 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.4E-11 | 4 | 52 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-17 | 6 | 49 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.05E-17 | 7 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-13 | 15 | 30 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-13 | 30 | 51 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MNPHSSSSDH ITFAKRRNWL MKKAKDLSQL CDAEVGIIVF SCTGQLYEYS SSRSVCINRF 60 DSPCLPLPSS HMRARTPARA RTNHDTCACA SSSCSFGCHS GATFSSMSGL ISEMTTLLRL 120 TPSFRVITIG STF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018717722.1 | 1e-29 | PREDICTED: MADS-box transcription factor 27 isoform X3 | ||||
TrEMBL | A0A059ATD0 | 2e-27 | A0A059ATD0_EUCGR; Uncharacterized protein | ||||
STRING | XP_010029960.1 | 5e-28 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.2 | 1e-17 | AGAMOUS-like 16 |