PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

EcS543292.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

LBD

Protein Properties

Length: 137aa MW: 15285 Da PI: 6.3419

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS543292.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	82.6	5.9e-26	1	71	29	99
DUF260 29 kfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 kfanvhk+FGasnv+kll+++ +++red+++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el+++++ EcS543292.10 1 KFANVHKIFGASNVSKLLNEVLPHQREDTVNSLAYEAEARLKDPVYGCVGAISVLQRQVIRLQKELDATNA 71 69****************************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	7.4E-25	1	70	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	16.908	1	73	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
KFANVHKIFG ASNVSKLLNE VLPHQREDTV NSLAYEAEAR LKDPVYGCVG AISVLQRQVI 60 RLQKELDATN ADLIQYTCRE MPSTVSRPVH YRRKNNNNMV QVYGDGGFDQ NCGGYYHPNA 120 WSNVHDGDGQ EGDDGGM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-42	1	81	39	119	LOB family transfactor Ramosa2.1
5ly0_B	4e-42	1	81	39	119	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010033314.1	1e-100	PREDICTED: LOB domain-containing protein 25 isoform X1
Swissprot	Q8L8Q3	6e-42	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A059AGJ2	2e-98	A0A059AGJ2_EUCGR; Uncharacterized protein
STRING	XP_010033314.1	2e-99	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	3e-44	LOB domain-containing protein 25

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]