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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS527742.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | bHLH | ||||||||
Protein Properties | Length: 56aa MW: 6488.56 Da PI: 12.0815 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.2 | 1.4e-08 | 23 | 53 | 1 | 34 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...T CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskap 34 rr+ +++E++RR+r+++ ++ L +llP++ p EcS527742.10 23 RRTERKIIEKNRRNRMKHLYSVLNSLLPSQ---P 53 7999*************************5...2 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.29E-6 | 20 | 54 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.115 | 22 | 56 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.9E-6 | 23 | 52 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.8E-7 | 23 | 52 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 56 aa Download sequence Send to blast |
MALSLLNAIG KEMERGRQPS SPRRTERKII EKNRRNRMKH LYSVLNSLLP SQPSAQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018720370.1 | 6e-31 | PREDICTED: uncharacterized protein LOC108955971 | ||||
TrEMBL | A0A058ZZB7 | 1e-30 | A0A058ZZB7_EUCGR; Uncharacterized protein | ||||
STRING | XP_010035765.1 | 9e-28 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1278 | 25 | 92 |