PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC079630.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 107aa    MW: 12360.9 Da    PI: 5.8705
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC079630.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.84.2e-3423106294
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                   Fl+k+y++++d+ +++lisw+e+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F+kg+k ll
  EcC079630.10  23 FLTKTYQLVDDPGVDDLISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFRKGEKALL 106
                   9*****************************************************************99.........************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.8E-3915106IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.5E-5119107IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.87E-3420107IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.0E-222346IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-3023106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-226173IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406286IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-227486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MPGEQTGDSP VAGDSQRSLP TPFLTKTYQL VDDPGVDDLI SWNEDGTTFI VWRPAEFARD  60
LLPKYFKHNN FSSFVRQLNT YGFRKVVPDR WEFANDCFRK GEKALLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-26810613123Heat shock factor protein 1
5d5v_B5e-26810613123Heat shock factor protein 1
5d5v_D5e-26810613123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055608.21e-76PREDICTED: heat stress transcription factor B-2b
SwissprotQ9T0D37e-59HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A059C1N52e-75A0A059C1N5_EUCGR; Uncharacterized protein
STRINGXP_010055608.12e-75(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.13e-61HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]