PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC076447.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 98aa    MW: 11026.3 Da    PI: 9.8202
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC076447.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.9e-081661345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+   + + +a +++ ++   +W+ +ar +g +++++++k r+ 
     EcC076447.10 16 SWTPTQNKMFERALALYDKDtpdRWHNVARAVGGNKSAEEVKRRYD 61
                     7*******************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.493964IPR017877Myb-like domain
SMARTSM007171.5E-71366IPR001005SANT/Myb domain
SuperFamilySSF466892.34E-121572IPR009057Homeodomain-like
PfamPF002492.5E-61662IPR001005SANT/Myb domain
CDDcd001671.65E-51764No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
EIRKMASSSL SHSSSSWTPT QNKMFERALA LYDKDTPDRW HNVARAVGGN KSAEEVKRRY  60
DMLVQDVMSI ESGQVPLPKY RASSASYGTS RAMAEEQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-27889282RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060956.14e-55PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1732e-34RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A059BQ461e-53A0A059BQ46_EUCGR; Uncharacterized protein
STRINGXP_010060956.12e-54(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.19e-35RAD-like 6