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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC074126.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | C2H2 | ||||||||
Protein Properties | Length: 157aa MW: 18342.8 Da PI: 9.738 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.1 | 1.5e-05 | 52 | 77 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C C Fs+ksnL++H + H EcC074126.10 52 FRCDveGCLHIFSTKSNLRQHVKAvH 77 899999***************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 40 | 20 | 41 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 3.92E-8 | 34 | 94 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.6E-7 | 52 | 77 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.635 | 52 | 82 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0014 | 52 | 77 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 54 | 77 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.5E-4 | 78 | 106 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 27 | 83 | 109 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 85 | 109 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
KYFSNVDYLK EHMRSAHQLV NCDICGTKQL RKNIQRHLHT HEKKNSADSE AFRCDVEGCL 60 HIFSTKSNLR QHVKAVHLEV RPFVCGHKDC GKKFAYKHVR DHHEKTGCHV YTSGDFEELD 120 GQFRSRPRGG RKRKCPTNES LLRKRVTLPN ELDFLSN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 133 | RPRGGRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010034379.1 | 1e-103 | PREDICTED: transcription factor IIIA | ||||
Swissprot | Q84MZ4 | 3e-53 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | A0A059DCN0 | 1e-100 | A0A059DCN0_EUCGR; Uncharacterized protein | ||||
STRING | XP_010034379.1 | 1e-102 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4714 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.1 | 2e-56 | transcription factor IIIA |