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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | EcC072672.10 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 203aa MW: 22078.7 Da PI: 9.3142 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 14.1 | 0.00014 | 112 | 134 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23
C++Cg+ F+ + + H + H
EcC072672.10 112 ICHKCGEQFKKLDAVEAHHLSkH 134
6*****************98877 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE pattern | PS00028 | 0 | 113 | 134 | IPR007087 | Zinc finger, C2H2 |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 203 aa Download sequence Send to blast |
MFRRWSNSHH SEEDDSLQFE SKIMGIRGKV GGNHSGSDSI SSTFVGTLHP ETPGPRGQYM 60 VPSSYSFPRS MSTPSRKIDG SSATSGGSRS GGFPKSRTMV GPDAHSGSLV LICHKCGEQF 120 KKLDAVEAHH LSKHAVTELS DGDSSKRIVE IICQMSWLKS EHSSCGQIER VLKVTTCKAP 180 SPGSKNIERW SRSEPASYPR STP |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010049497.1 | 1e-120 | PREDICTED: uncharacterized protein LOC104438113 isoform X1 | ||||
| TrEMBL | A0A059CDF3 | 4e-76 | A0A059CDF3_EUCGR; Uncharacterized protein | ||||
| STRING | XP_010049497.1 | 1e-119 | (Eucalyptus grandis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM3553 | 8 | 12 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G27240.1 | 4e-25 | C2H2 family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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