PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

EcC064765.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

LBD

Protein Properties

Length: 95aa MW: 10541 Da PI: 3.902

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC064765.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	40.9	6e-13	1	40	61	100
DUF260 61 lvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +vyeA ar+rdPvyG++g i++lq+q+ +l+a+la++++e EcC064765.10 1 MVYEASARIRDPVYGCTGAISQLQKQVVELQAQLAKAQAE 40 69**********************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.41	1	41	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.7E-11	1	38	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 95 aa Download sequence Send to blast
MVYEASARIR DPVYGCTGAI SQLQKQVVEL QAQLAKAQAE VANLQCQNTN LFALICMEMS 60 QSQDQPVFQQ QCPAAMDASC FPDETNLVPS WELWA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010068859.1	1e-63	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	6e-21	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	B9HLY2	3e-37	B9HLY2_POPTR; Uncharacterized protein
STRING	XP_010068859.1	5e-63	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-12	LOB domain-containing protein 1