PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC060070.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family DBB
Protein Properties Length: 261aa    MW: 28138.9 Da    PI: 6.4887
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC060070.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.91.5e-063882442
      zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                    C+ +e  e++  C  ++  lC  C ++ H        H++vpl
  EcC060070.10 38 IQCNVCEAAEASVLCCADEAALCWACDEKVHAAnklaskHQRVPL 82
                  57******99*********************66899999999986 PP
2zf-B_box26.11.8e-0887121135
      zf-B_box   1 seerkCpeHeekelqlfCedCqqllCedClleeHk 35 
                   s+++kC+ ++e    +fC +++ llC++C l++H 
  EcC060070.10  87 SQMPKCDICQETAGFFFCIEDRALLCRKCDLAIHT 121
                   689********98999******************4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.5E-123582IPR000315B-box-type zinc finger
PROSITE profilePS5011910.7513582IPR000315B-box-type zinc finger
CDDcd000212.37E-73882No hitNo description
PROSITE profilePS501199.11587134IPR000315B-box-type zinc finger
SMARTSM003366.5E-1487134IPR000315B-box-type zinc finger
PfamPF006438.7E-688129IPR000315B-box-type zinc finger
CDDcd000213.49E-790134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
IPHLWWRREA VARDFRSRVV VSGVYVRGVG VGVGEMKIQC NVCEAAEASV LCCADEAALC  60
WACDEKVHAA NKLASKHQRV PLSTSASQMP KCDICQETAG FFFCIEDRAL LCRKCDLAIH  120
TVNTYVSAHQ RFLLTGVTVG LEPTEPHPSS SSINSQPGEK ISEIKSKSSS LSNGGNPLPS  180
HNEYNDIPSV HTDGVGSLIN AKLPFSGGSA AASMPQWHLD ELLGFSDFNQ SFSFMGNGSS  240
KVCVLPIVFP CSCHCSSDFV D
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060760.11e-145PREDICTED: B-box zinc finger protein 22
SwissprotQ9SYM23e-77BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A059BNL01e-146A0A059BNL0_EUCGR; Uncharacterized protein
STRINGXP_010060760.11e-144(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56062849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.21e-77light-regulated zinc finger protein 1