PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

EcC057550.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Protein Properties

Length: 84aa MW: 9547.78 Da PI: 10.2306

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC057550.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	41.7	2.1e-13	6	69	18	85
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 lp +f++ + ++ k + l+d+s r+W v + + g lt+GW +F +ang++ gD +vF+l+ EcC057550.10 6 LPSSFFKGSS--SRDRKVVFLTDPSKRTWPVLY--HERLGVRSLTSGWDGFRQANGIQRGDDCVFQLQ 69 7888885554..445678999**********..88888888*********************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	13.014	1	84	IPR003340	B3 DNA binding domain
CDD	cd10017	2.17E-11	6	84	No hit	No description
Gene3D	G3DSA:2.40.330.10	6.6E-14	6	80	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.02E-13	6	69	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	8.1E-11	6	75	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 84 aa Download sequence Send to blast
ELPADLPSSF FKGSSSRDRK VVFLTDPSKR TWPVLYHERL GVRSLTSGWD GFRQANGIQR 60 GDDCVFQLQI LSNSQSLYKV SITR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010037470.1	5e-53	PREDICTED: B3 domain-containing protein Os01g0905400
TrEMBL	A0A059A5R6	1e-51	A0A059A5R6_EUCGR; Uncharacterized protein
STRING	XP_010037470.1	2e-52	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18537	5	8