PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055231.160
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 394aa    MW: 43805.8 Da    PI: 9.2954
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055231.160genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY902e-28237296159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    ++Dg++WrKYGqK  +++++pr+Y++C++a +C vkkkv+rsaed++v++ tYegeHnh+
  EcC055231.160 237 VKDGHQWRKYGQKITRDNPCPRAYFKCAHApSCLVKKKVQRSAEDQSVIVATYEGEHNHP 296
                    58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081125.04232298IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.9E-26234297IPR003657WRKY domain
SuperFamilySSF1182903.4E-24235297IPR003657WRKY domain
SMARTSM007743.9E-33237297IPR003657WRKY domain
PfamPF031068.7E-24238296IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0006855Biological Processdrug transmembrane transport
GO:0015074Biological ProcessDNA integration
GO:0030001Biological Processmetal ion transport
GO:0055114Biological Processoxidation-reduction process
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004190Molecular Functionaspartic-type endopeptidase activity
GO:0004506Molecular Functionsqualene monooxygenase activity
GO:0005515Molecular Functionprotein binding
GO:0015238Molecular Functiondrug transmembrane transporter activity
GO:0015297Molecular Functionantiporter activity
GO:0016747Molecular Functiontransferase activity, transferring acyl groups other than amino-acyl groups
GO:0043169Molecular Functioncation binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046873Molecular Functionmetal ion transmembrane transporter activity
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MGIEALTALL QLSSHLYQSP SFLPRSAKPA VDFLGHGLYN EEEVRFCLVV LRRLPPLRLV  60
LKNKTRTRTR KPTLCLRRSM DSSSWITSSL DLSIRPLQVS EEPPTKVVES DFMELGRTGS  120
GNKDESGALL EELNRLAAEN KKLSQMLMTV CENYNALRNH VIEIVSKNAE REVSPCKKRK  180
SESSTNDNGN EMVVNRASES SSTDDDDLYK KPREETIKAK ITRVYYRTEG PGTSLIVKDG  240
HQWRKYGQKI TRDNPCPRAY FKCAHAPSCL VKKKVQRSAE DQSVIVATYE GEHNHPSSSL  300
LEATCGSNAR ATLDSVPRSA SLSSSGPSVT LDLMKPKQET DVKSSQPKVD SPELRQFLIE  360
QMASSLTKDP SFTTALAAAI SGKMVGPYPT EKRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-182362951674Probable WRKY transcription factor 4
2lex_A3e-182362951674Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034033.10.0PREDICTED: probable WRKY transcription factor 40
SwissprotQ9SAH72e-93WRK40_ARATH; Probable WRKY transcription factor 40
TrEMBLA0A059AJI70.0A0A059AJI7_EUCGR; Uncharacterized protein
STRINGXP_010034033.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.13e-82WRKY DNA-binding protein 40
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang Y, et al.
    Regulation of oncogene expression in T-DNA-transformed host plant cells.
    PLoS Pathog., 2015. 11(1): p. e1004620
    [PMID:25615824]
  3. Geilen K,Böhmer M
    Dynamic subnuclear relocalisation of WRKY40 in response to Abscisic acid in Arabidopsis thaliana.
    Sci Rep, 2015. 5: p. 13369
    [PMID:26293691]
  4. Geilen K,Böhmer M
    Dynamic subnuclear relocalization of WRKY40, a potential new mechanism of ABA-dependent transcription factor regulation.
    Plant Signal Behav, 2015. 10(11): p. e1106659
    [PMID:26479147]
  5. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  6. Carrió-Seguí À,Romero P,Sanz A,Peñarrubia L
    Interaction Between ABA Signaling and Copper Homeostasis in Arabidopsis thaliana.
    Plant Cell Physiol., 2016. 57(7): p. 1568-1582
    [PMID:27328696]
  7. Lu K, et al.
    Overexpression of an Arabidopsis cysteine-rich receptor-like protein kinase, CRK5, enhances abscisic acid sensitivity and confers drought tolerance.
    J. Exp. Bot., 2016. 67(17): p. 5009-27
    [PMID:27406784]
  8. Birkenbihl RP,Kracher B,Roccaro M,Somssich IE
    Induced Genome-Wide Binding of Three Arabidopsis WRKY Transcription Factors during Early MAMP-Triggered Immunity.
    Plant Cell, 2017. 29(1): p. 20-38
    [PMID:28011690]
  9. Lee MH,Jeon HS,Kim HG,Park OK
    An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
    New Phytol., 2017. 214(1): p. 343-360
    [PMID:28032643]
  10. Zhang S, et al.
    The Arabidopsis Mitochondrial Protease FtSH4 Is Involved in Leaf Senescence via Regulation of WRKY-Dependent Salicylic Acid Accumulation and Signaling.
    Plant Physiol., 2017. 173(4): p. 2294-2307
    [PMID:28250067]
  11. Cheng P, et al.
    The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 182
    [PMID:29497438]