PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055219.60
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 268aa    MW: 30483.1 Da    PI: 5.086
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055219.60genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM144.27e-4561301129
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                   l+pGfrFhPtd elv +yLkkkv gk+++  e+i+evdiy++ Pw Lp ++  +++ +wyfF++r++kyatg r+nr+t+ g+Wk+tg+d++v+  +
  EcC055219.60   6 LAPGFRFHPTDVELVLYYLKKKVLGKRFRN-EAIAEVDIYNFPPWALPgHARLSRDLKWYFFCPRERKYATGARTNRSTDYGFWKTTGNDRPVIY-N 100
                   579************************999.89***************433334666**************************************.9 PP

           NAM  97 gelvglkktLvfykgrapkgektdWvmheyrle 129
                   g++vg  ++L+f++    k+e+tdWvmheyrle
  EcC055219.60 101 GKTVGKIRSLIFHR---TKTERTDWVMHEYRLE 130
                   99***********4...44568*********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.24E-533152IPR003441NAC domain
PROSITE profilePS5100552.1496152IPR003441NAC domain
PfamPF023651.4E-248129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006511Biological Processubiquitin-dependent protein catabolic process
GO:0006537Biological Processglutamate biosynthetic process
GO:0009860Biological Processpollen tube growth
GO:0048768Biological Processroot hair cell tip growth
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0005886Cellular Componentplasma membrane
GO:0030659Cellular Componentcytoplasmic vesicle membrane
GO:0035619Cellular Componentroot hair tip
GO:0003677Molecular FunctionDNA binding
GO:0004430Molecular Function1-phosphatidylinositol 4-kinase activity
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008270Molecular Functionzinc ion binding
GO:0016639Molecular Functionoxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor
GO:0017137Molecular FunctionRab GTPase binding
GO:0031625Molecular Functionubiquitin protein ligase binding
GO:0043424Molecular Functionprotein histidine kinase binding
GO:0043531Molecular FunctionADP binding
GO:0051536Molecular Functioniron-sulfur cluster binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MAMRSLAPGF RFHPTDVELV LYYLKKKVLG KRFRNEAIAE VDIYNFPPWA LPGHARLSRD  60
LKWYFFCPRE RKYATGARTN RSTDYGFWKT TGNDRPVIYN GKTVGKIRSL IFHRTKTERT  120
DWVMHEYRLE DEDLKTKGVA QDTYVLCEIY EKDGRGPRNG AQYGAPFNEE EWDDDEEVDV  180
PSASGFTGEF ILPDMQQHSE RYCVGSTSNA CPAGPPQITP SVVNVPAPAP ANDVTMADSQ  240
NLCDEYLRSN GIFGDDIPAT SCENDRVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-40115312166NO APICAL MERISTEM PROTEIN
1ut4_B1e-40115312166NO APICAL MERISTEM PROTEIN
1ut7_A1e-40115312166NO APICAL MERISTEM PROTEIN
1ut7_B1e-40115312166NO APICAL MERISTEM PROTEIN
4dul_A1e-40115312166NAC domain-containing protein 19
4dul_B1e-40115312166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010027672.10.0PREDICTED: NAC domain-containing protein 82 isoform X9
RefseqXP_018718284.10.0PREDICTED: NAC domain-containing protein 82 isoform X7
RefseqXP_018718285.10.0PREDICTED: NAC domain-containing protein 82 isoform X8
SwissprotQ9FY822e-78NAC82_ARATH; NAC domain-containing protein 82
TrEMBLA0A059AKK70.0A0A059AKK7_EUCGR; Uncharacterized protein
TrEMBLA0A059ALF20.0A0A059ALF2_EUCGR; Uncharacterized protein
STRINGXP_010027667.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.11e-64NAC domain containing protein 103
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]