PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055214.120
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 290aa    MW: 32296.4 Da    PI: 8.3936
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055214.120genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79e-055173123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C+ C++ F++   L  H+++H
  EcC055214.120 51 YSCSFCNREFRSAQALGGHMNVH 73
                   99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.15E-64877No hitNo description
PROSITE profilePS5015711.5525178IPR007087Zinc finger, C2H2
PfamPF139122.5E-65174IPR007087Zinc finger, C2H2
SMARTSM003550.00285173IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0015074Biological ProcessDNA integration
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0004252Molecular Functionserine-type endopeptidase activity
GO:0004523Molecular FunctionRNA-DNA hybrid ribonuclease activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MKKAQYSMST AGIHHLLKSH YGQARTPIGG DSWEEKAFAE DFGCVWPPRS YSCSFCNREF  60
RSAQALGGHM NVHRRDRARL KQSALSNQSD EILSQTRKPG LSGIVLPYQL QSEAFSLLDH  120
KNDLNSSNYF TPSLSSKVLG LPSSDKKLPR PEELACSPYH SVLVKEGQKV LFDPVTMKVH  180
CSSDKDRLEM QKNLREDEHE CFDSSSSETD LSVGLSSNFG RRPPATSSCS NEAINLKRPK  240
TSESSWRTVL NPCSSIGGYP RKSDVQIGLK VSSMEDLDLE LRLGDPPKVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-124673229superman protein
2l1o_A1e-124673229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034352.10.0PREDICTED: transcriptional regulator SUPERMAN
TrEMBLA0A059AEF40.0A0A059AEF4_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010034352.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.13e-27zinc-finger protein 10