PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055206.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 337aa    MW: 37637.9 Da    PI: 7.9077
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055206.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.4e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl
     EcC055206.30 14 KGPWSPEEDSKLKEYIEKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding39.61.2e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ eEd ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
     EcC055206.30  69 GEFSDEEDRIIFSLFATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.788962IPR017930Myb domain
SuperFamilySSF466897.42E-2811109IPR009057Homeodomain-like
SMARTSM007174.3E-131364IPR001005SANT/Myb domain
PfamPF002497.0E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-241569IPR009057Homeodomain-like
CDDcd001674.85E-101662No hitNo description
PROSITE profilePS5129422.21763117IPR017930Myb domain
SMARTSM007175.9E-1367115IPR001005SANT/Myb domain
PfamPF002491.6E-1169111IPR001005SANT/Myb domain
CDDcd001672.00E-970113No hitNo description
Gene3DG3DSA:1.10.10.602.8E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006559Biological ProcessL-phenylalanine catabolic process
GO:0006979Biological Processresponse to oxidative stress
GO:0015074Biological ProcessDNA integration
GO:0055114Biological Processoxidation-reduction process
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0004601Molecular Functionperoxidase activity
GO:0005515Molecular Functionprotein binding
GO:0016841Molecular Functionammonia-lyase activity
GO:0020037Molecular Functionheme binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDSKLKEYIE KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDRIIF SLFATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGM  120
IPPSQRKLMI PPFSSSTPNN YPISPSSQLS SLPSSLYRDC TASFYNPPSN NNRPSITNLE  180
FSSSLPSSTT LLTDSSSLFQ AQEGGFLCPI QYDSSVKDIN NNNHNNMLVF GSSERSDCSY  240
GREMGIKQEQ LDFRGYIPNG FEGNNNVQRV ESSYSNSGSC DNANHLSGCF GGNDNSVLDY  300
DLEDVKRLIS SNSSSSNSLL FTDESNKIGD QRALYYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-30141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021690615.11e-111transcription factor RAX2-like
TrEMBLA0A059ACH10.0A0A059ACH1_EUCGR; Uncharacterized protein
STRINGEOY342871e-102(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-78myb domain protein 36