PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055203.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 387aa    MW: 42410.7 Da    PI: 9.3832
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055203.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.32e-142774148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed  l++ vk+ G g+W+++ +  g+ R++k+c++rw ++l
     EcC055203.30 27 KGPWTAAEDAVLIEHVKKNGEGNWNSVQKNTGLPRCGKSCRLRWTNHL 74
                     79******************************99***********996 PP
2Myb_DNA-binding52.21.4e-1680123146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T+eE+ l++++++qlG++ W++ a  ++ gRt++++k++w++
     EcC055203.30  80 KGSFTPEEERLILKLHAQLGNK-WARMATQLP-GRTDNEIKNYWNT 123
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.1252274IPR017930Myb domain
SuperFamilySSF466891.41E-2926121IPR009057Homeodomain-like
SMARTSM007179.4E-142676IPR001005SANT/Myb domain
PfamPF002495.8E-132774IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-222881IPR009057Homeodomain-like
CDDcd001674.52E-112974No hitNo description
PROSITE profilePS5129425.83875129IPR017930Myb domain
SMARTSM007172.2E-1479127IPR001005SANT/Myb domain
PfamPF002494.0E-1580123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2582129IPR009057Homeodomain-like
CDDcd001676.13E-1282123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000162Biological Processtryptophan biosynthetic process
GO:0006413Biological Processtranslational initiation
GO:0006486Biological Processprotein glycosylation
GO:0007264Biological Processsmall GTPase mediated signal transduction
GO:0008654Biological Processphospholipid biosynthetic process
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003743Molecular Functiontranslation initiation factor activity
GO:0003841Molecular Function1-acylglycerol-3-phosphate O-acyltransferase activity
GO:0004834Molecular Functiontryptophan synthase activity
GO:0005515Molecular Functionprotein binding
GO:0005525Molecular FunctionGTP binding
GO:0008378Molecular Functiongalactosyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
NDGRSTGSSS SGSGSAGSGG GGLVLKKGPW TAAEDAVLIE HVKKNGEGNW NSVQKNTGLP  60
RCGKSCRLRW TNHLRPNLKK GSFTPEEERL ILKLHAQLGN KWARMATQLP GRTDNEIKNY  120
WNTRIKHRIR QGLPLYPHDI TPEHLPSSSV PQAMEPRLNT TSQLHTPTPI RILIPPIPTS  180
QHLPQTPSSM LLSPQCSQHY LKSSFFYPSP SLGCPASIFT NTCTTPVLAS SLLRLKGSYE  240
DTTKFSLSFP PISLGSSPLP SVPTPTQFPN MGSFQFSPLS CNVSSPQYVQ TQPDSDRYSS  300
TVSVFPSKSE LPSSQLYLIQ PETDEKQRRG MHWSGSGLME DLLDDTQALS NQNPQTQSFM  360
NLQAEKLNVS LRSGCDWHAG SSLNTSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-322512925128MYB TRANSFORMING PROTEIN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010063022.10.0PREDICTED: uncharacterized protein LOC104450247
TrEMBLA0A218X9882e-90A0A218X988_PUNGR; Uncharacterized protein
STRINGXP_010063022.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55020.15e-69myb domain protein 120