PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055193.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family FAR1
Protein Properties Length: 661aa    MW: 75196.2 Da    PI: 7.0983
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055193.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR160.55.4e-1943129188
          FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                   +fY++YAk++ F+vr+ k ++s +++g +  + f Cs+ g++++e+ + + +r +r  trtgC+ak++   + dg+w++++++l+HnH 
  EcC055193.10  43 NFYSSYAKQTCFNVRRGKAEYSgSDKGVVRAKSFLCSCGGHKSKEQIA-NATRYKRRDTRTGCDAKIECAVN-DGTWKISEVVLKHNHV 129
                   6****************99999788899999*************9999.999******************99.***************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1543128IPR004330FAR1 DNA binding domain
PfamPF105515.3E-14226309IPR018289MULE transposase domain
PROSITE profilePS509669.458519557IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006289Biological Processnucleotide-excision repair
GO:0006308Biological ProcessDNA catabolic process
GO:0043161Biological Processproteasome-mediated ubiquitin-dependent protein catabolic process
GO:0005634Cellular Componentnucleus
GO:0003684Molecular Functiondamaged DNA binding
GO:0004519Molecular Functionendonuclease activity
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
AIGRDEDELH STYGANTDGE DLESDPQVPR VGMEFDSEVA VYNFYSSYAK QTCFNVRRGK  60
AEYSGSDKGV VRAKSFLCSC GGHKSKEQIA NATRYKRRDT RTGCDAKIEC AVNDGTWKIS  120
EVVLKHNHVT TALSTGRIAY QVRAVGERAL DSDTDPTWED RPRPAPEETQ DLIDHFRRLA  180
RLDCCSCYSL RVVEARGMEN FFWRDSRSKL DYEHFSDLLV LDTRTWISKY GMIFAMFWGL  240
NHHRKPTIFG HGLLVDRTVG SFHWLLDTFL QSMNWRKPRT IITEVGEEIA EAVSLVLPET  300
RHCLPAWSVL NSFRKYLSPL SDQLDVVELF RKCVFLRSRE EFESKWNSFI GKYKLRDNSW  360
LASLYKMREK WSHAFTKNVF SVGLLSIQNV EDAGSLSSKT NVFSVGLLSI QNVEDAGSLS  420
SETMTLTEIA WRSEQVAKEV RAEEFRDDML CEKNTVNLKT RNPTEKEAGR LYTPRVFEMF  480
QKEFINCLGL AMEEIKCSET LRMFQLTEAG DTKTHTASSR QIVEYDSSDS TLACSCGKFE  540
SVGILCDHVF RVLNFTNVVS EIPPRYFLKR WTKSAKDSVP VPVPTPSAAA RDKGPVDSFT  600
GEFVRKALHV AHMSVNKKRK RIAMSFIDSA VEHIAKVLKT EEAAAALDHP DVTDDKDRTI  660
C
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018720151.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
TrEMBLA0A059D3A40.0A0A059D3A4_EUCGR; Uncharacterized protein
STRINGXP_010046590.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-67FAR1-related sequence 5