PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055192.60
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 251aa    MW: 28568.4 Da    PI: 9.778
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055192.60genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.53.8e-51141401128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                   lppGfrFhPtdeelv +yL++kv + +l++ ++i+ev+++k++PwdLp      ++e yfFs+r+ ky++g+r+nrat sgyWkatg d++++s+  
  EcC055192.60  14 LPPGFRFHPTDEELVLQYLRRKVYSFPLPA-SIIPEVEVCKSDPWDLPGD---LDQERYFFSTREAKYPNGNRSNRATVSGYWKATGIDRQIVSSrg 106
                   79****************************.89***************54...46899************************************977 PP

           NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    ++++vg+kktLvfy+g+ p+g+ktdW+mheyrl
  EcC055192.60 107 sQSQVVGMKKTLVFYRGKPPSGSKTDWIMHEYRL 140
                   77778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-589173IPR003441NAC domain
PROSITE profilePS5100557.08214173IPR003441NAC domain
PfamPF023651.1E-2615140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0006629Biological Processlipid metabolic process
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0008081Molecular Functionphosphoric diester hydrolase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDKLNFVKNG VLRLPPGFRF HPTDEELVLQ YLRRKVYSFP LPASIIPEVE VCKSDPWDLP  60
GDLDQERYFF STREAKYPNG NRSNRATVSG YWKATGIDRQ IVSSRGSQSQ VVGMKKTLVF  120
YRGKPPSGSK TDWIMHEYRL VNPEASVPPK IMNLNQTPVE PMESWVLCRI FLKRRSSKNE  180
GETPVPCQNL KEGPKSRKNK PVFYDFMTRD LNLVPSSSSS GSSGVTEVSS HNNTDEHEES  240
SCNSLRKALK H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-501217815170NO APICAL MERISTEM PROTEIN
1ut4_B1e-501217815170NO APICAL MERISTEM PROTEIN
1ut7_A1e-501217815170NO APICAL MERISTEM PROTEIN
1ut7_B1e-501217815170NO APICAL MERISTEM PROTEIN
3swm_A1e-501217818173NAC domain-containing protein 19
3swm_B1e-501217818173NAC domain-containing protein 19
3swm_C1e-501217818173NAC domain-containing protein 19
3swm_D1e-501217818173NAC domain-containing protein 19
3swp_A1e-501217818173NAC domain-containing protein 19
3swp_B1e-501217818173NAC domain-containing protein 19
3swp_C1e-501217818173NAC domain-containing protein 19
3swp_D1e-501217818173NAC domain-containing protein 19
4dul_A1e-501217815170NAC domain-containing protein 19
4dul_B1e-501217815170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044859.10.0PREDICTED: NAC domain-containing protein 83 isoform X2
SwissprotQ9FY932e-96NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A059D8C80.0A0A059D8C8_EUCGR; Uncharacterized protein
STRINGXP_010044858.11e-177(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-88NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]