PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055184.160
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 173aa    MW: 19341.1 Da    PI: 9.9758
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055184.160genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-0582103223
                    EETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                    +C+ C+k+F++   L  H++ H
  EcC055184.160  82 PCSVCHKRFRSTTALFGHMKIH 103
                    5*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.2E-42035IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.15981108IPR007087Zinc finger, C2H2
SuperFamilySSF576671.61E-682116No hitNo description
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.4E-483103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.4E-783105IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006629Biological Processlipid metabolic process
GO:0015074Biological ProcessDNA integration
GO:0016020Cellular Componentmembrane
GO:0003676Molecular Functionnucleic acid binding
GO:0004571Molecular Functionmannosyl-oligosaccharide 1,2-alpha-mannosidase activity
GO:0005509Molecular Functioncalcium ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MIIGENPAKQ NTGKVSNKIL SSGQVLGGHM SCHMAKNILR REPSLAIGNS SGKARRLGYC  60
LRENPKKSWK FLGLMENAQE NPCSVCHKRF RSTTALFGHM KIHLSKDDER CDWCADRGKG  120
SGSMKSCQDR ARPIHDGERL NLSLSKGDLL LHVRRGNAHD QEEEDTASQL RCR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034405.14e-77PREDICTED: uncharacterized protein LOC104423639
STRINGXP_010034405.12e-76(Eucalyptus grandis)