PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055122.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 325aa    MW: 35890.4 Da    PI: 6.6433
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055122.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-151865148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l +++++ G g+W+  +++ g++R++k+c++rw +yl
     EcC055122.30 18 KGPWSAEEDAKLSEYIEKEGHGRWSDLPKKAGLNRCGKSCRLRWINYL 65
                     79********************************************97 PP
2Myb_DNA-binding52.31.3e-1671114146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++ eE+  +++ + ++G++ W++Ia +++ gRt++++k++w++
     EcC055122.30  71 RGNFSDEEEAMIINFHSLYGNK-WSKIATHLQ-GRTDNEIKNHWNT 114
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.7411365IPR017930Myb domain
SuperFamilySSF466893.19E-3015112IPR009057Homeodomain-like
SMARTSM007173.4E-131767IPR001005SANT/Myb domain
PfamPF002492.0E-141865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-241972IPR009057Homeodomain-like
CDDcd001671.55E-102065No hitNo description
PROSITE profilePS5129427.61566120IPR017930Myb domain
SMARTSM007179.9E-1670118IPR001005SANT/Myb domain
PfamPF002495.8E-1571114IPR001005SANT/Myb domain
CDDcd001676.15E-1273114No hitNo description
Gene3DG3DSA:1.10.10.604.0E-2673120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006281Biological ProcessDNA repair
GO:0006506Biological ProcessGPI anchor biosynthetic process
GO:0006886Biological Processintracellular protein transport
GO:0009733Biological Processresponse to auxin
GO:0016192Biological Processvesicle-mediated transport
GO:0055085Biological Processtransmembrane transport
GO:0016021Cellular Componentintegral component of membrane
GO:0030131Cellular Componentclathrin adaptor complex
GO:0003677Molecular FunctionDNA binding
GO:0004518Molecular Functionnuclease activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
GO:0016746Molecular Functiontransferase activity, transferring acyl groups
GO:0042626Molecular FunctionATPase activity, coupled to transmembrane movement of substances
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MVRSPCCSGD HEAEGLKKGP WSAEEDAKLS EYIEKEGHGR WSDLPKKAGL NRCGKSCRLR  60
WINYLRPDIK RGNFSDEEEA MIINFHSLYG NKWSKIATHL QGRTDNEIKN HWNTRMKKKL  120
LRMGIDPNTH KPRTDHLNQA MNLSQLLGTG GGPHLGSPPL SSLENAIANA AELAKLQLQS  180
LLVQIIGTSN PPPIMDHGST NNSLLGIPNY DNRHLGVLGF APPMQHQAVN HSSPWPSYGG  240
GFGVIRGDDN GGLCGDACMI QPENPLPQLV SASPEGSTVK NQFESESLPI CSNWPTQSQA  300
LTFVEDWEKL LEEDTSASFL REILQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-281612025128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055297.10.0PREDICTED: transcription factor MYB39
TrEMBLA0A059BZW20.0A0A059BZW2_EUCGR; Uncharacterized protein
STRINGXP_010055297.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.18e-74myb domain protein 107