PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055069.70
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 319aa    MW: 35073.9 Da    PI: 5.4405
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055069.70genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.38.8e-25136196259
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                   +D ++WrKYGqK++ ++++prsY+rCt++   gC++ k+v+r+++dp+ ++itY g H+++
  EcC055069.70 136 QDNHAWRKYGQKMILNAKHPRSYFRCTHKydqGCKAAKQVQRTEDDPEKFHITYIGVHTCR 196
                   79**************************99999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.4E-25124196IPR003657WRKY domain
PROSITE profilePS5081119.462130193IPR003657WRKY domain
SuperFamilySSF1182902.35E-23133196IPR003657WRKY domain
SMARTSM007742.3E-34135197IPR003657WRKY domain
PfamPF031061.7E-23136196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0006412Biological Processtranslation
GO:0006468Biological Processprotein phosphorylation
GO:0006817Biological Processphosphate ion transport
GO:0015074Biological ProcessDNA integration
GO:0019243Biological Processmethylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
GO:0032784Biological Processregulation of DNA-templated transcription, elongation
GO:0055085Biological Processtransmembrane transport
GO:0005634Cellular Componentnucleus
GO:0005840Cellular Componentribosome
GO:0016021Cellular Componentintegral component of membrane
GO:0000049Molecular FunctiontRNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0004416Molecular Functionhydroxyacylglutathione hydrolase activity
GO:0004672Molecular Functionprotein kinase activity
GO:0005315Molecular Functioninorganic phosphate transmembrane transporter activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGTDWPGEEG SPSASAVVKT KRVVEELLRG RCAAIQLQLL LQNPPGRDGS DGSRSLSAEE  60
LAEKILRSFA EGLSVLGSCC ESASAGHDHQ VSPSSGESGD SKRRLNLKDR SGCHKRRCDQ  120
ESKASQTWIK VSSTTQDNHA WRKYGQKMIL NAKHPRSYFR CTHKYDQGCK AAKQVQRTED  180
DPEKFHITYI GVHTCRDIMK TPRMLITDPD TCVGESFPIK QELREEARSD LTNDNVSSAD  240
LFLITALGSS DQPNDPASVS SERMGFDNAN GEPAVPTMYP FGDDADSHAL GMDFLRRSVS  300
FDGDFSFDES EFLASEVGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-25131196469OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031072.10.0PREDICTED: probable WRKY transcription factor 70 isoform X1
RefseqXP_018719341.10.0PREDICTED: probable WRKY transcription factor 70 isoform X1
TrEMBLA0A059A8940.0A0A059A894_EUCGR; Uncharacterized protein
STRINGXP_010031072.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.16e-38WRKY DNA-binding protein 70