PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055005.50
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 219aa    MW: 24920.5 Da    PI: 9.7928
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055005.50genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69e-16855148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W +eEd +l+++v+ +G g+W+ ++++ g++R +k+c++rw +yl
     EcC055005.50  8 KGLWKPEEDMILKQYVETHGEGNWAVVSQRSGLKRGGKSCRLRWKNYL 55
                     678*****************************99************97 PP
2Myb_DNA-binding53.74.7e-1761106148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +++eE++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l
     EcC055005.50  61 RGGMSPEEEDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 106
                      6789******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.538355IPR017930Myb domain
SuperFamilySSF466894.49E-296102IPR009057Homeodomain-like
SMARTSM007172.8E-14757IPR001005SANT/Myb domain
PfamPF002491.1E-14855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-22962IPR009057Homeodomain-like
CDDcd001672.07E-101155No hitNo description
PROSITE profilePS5129425.19956110IPR017930Myb domain
SMARTSM007171.7E-1660108IPR001005SANT/Myb domain
PfamPF002492.0E-1561106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-2463109IPR009057Homeodomain-like
CDDcd001674.00E-1264106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0006487Biological Processprotein N-linked glycosylation
GO:0007165Biological Processsignal transduction
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003830Molecular Functionbeta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity
GO:0004672Molecular Functionprotein kinase activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MKARKIKKGL WKPEEDMILK QYVETHGEGN WAVVSQRSGL KRGGKSCRLR WKNYLRPNIK  60
RGGMSPEEED LIIRMHKLLG NRWSLIAGRL PGRTDNEVKN YWNTHLNKRH LSRKRNSIAS  120
NGRHKDENIC ATLATETATE VPAPPSMTPP PVIHNGSNDL DAKEAMMTGR KEDRLEDGER  180
FVYGCDMGSP LSMPTSNYSA SVVFDDELLV PWLDSFVFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-2381097107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047969.11e-160PREDICTED: transcription factor MYB82
SwissprotQ9LTF76e-69MYB82_ARATH; Transcription factor MYB82
TrEMBLA0A059CNL31e-159A0A059CNL3_EUCGR; Uncharacterized protein
STRINGXP_010047969.11e-160(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.11e-70myb domain protein 82