PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054968.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 600aa    MW: 65539 Da    PI: 8.4581
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054968.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.2e-31229286260
                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                   dDgynWrKYGqK+vkgs fprsYY+Ct+++C+vkk  ers  d++++ei+Y+g+H+h+k
  EcC054968.10 229 DDGYNWRKYGQKHVKGSVFPRSYYKCTHPNCEVKKLFERSP-DGHITEIIYKGTHDHPK 286
                   8****************************************.***************85 PP
2WRKY106.81.1e-33402460159
                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  EcC054968.10 402 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASNDPKAVITTYEGKHNHD 460
                   59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.71223287IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-26224287IPR003657WRKY domain
SuperFamilySSF1182901.57E-24226287IPR003657WRKY domain
SMARTSM007744.9E-32228286IPR003657WRKY domain
PfamPF031062.1E-23229285IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-37387462IPR003657WRKY domain
SuperFamilySSF1182901.96E-29394462IPR003657WRKY domain
PROSITE profilePS5081138.664397462IPR003657WRKY domain
SMARTSM007743.4E-39402461IPR003657WRKY domain
PfamPF031062.0E-26403460IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006457Biological Processprotein folding
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005507Molecular Functioncopper ion binding
GO:0005524Molecular FunctionATP binding
GO:0016491Molecular Functionoxidoreductase activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0051082Molecular Functionunfolded protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MDAPSSLGPH APRRSSDAAD DRGRTGCLRN SGPQDPAGRG ARYKLMSPAK LPISRSACVA  60
VPPGLSPTSF LESPVLLSNM KVEPSPTTGS FLERRMLHGS ISSTTGLTNN HPCRPDRFGE  120
KESGIFEFQP SPGPNPGTAE VNQKNKESMQ VHSHSQIQSL ALVPFVKSEL AVPSSELSLS  180
SPAKLVPSVA NPPDEVDSEE SNQQDHPGTG MQATQSDHKG NVMAERLSDD GYNWRKYGQK  240
HVKGSVFPRS YYKCTHPNCE VKKLFERSPD GHITEIIYKG THDHPKPLPN RRVAGGIILH  300
IQGDRSADVS PLTGETSSNV YCQTSNIIEP KSTTQLYLAA GNEDSVEGTA SLSYRIRDEV  360
DEDDPFSKRR RLDIGGLDVT PVIKPIREPR VVVQTLSEVD ILDDGYRWRK YGQKVVRGNP  420
NPRSYYKCTN AGCPVRKHVE RASNDPKAVI TTYEGKHNHD VPTARTSSHD MAAPIAPAGP  480
SRIGPEERET ISLDLGVGIS SAAEARFPNL QGSRHTIHQQ LVQNQIHSNN SSIKVLRATP  540
VSSYYRVENC GATTYCSTTE DLRGGRGLDV SPRNHSYSYQ QTVGRVITGP YACSPQNQSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36227462877Probable WRKY transcription factor 4
2lex_A1e-36227462877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1367371KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010063081.10.0PREDICTED: probable WRKY transcription factor 20 isoform X2
SwissprotQ93WV01e-171WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A059BVI20.0A0A059BVI2_EUCGR; Uncharacterized protein
STRINGXP_010063080.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-173WRKY family protein