PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC054928.40 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | WRKY | ||||||||
Protein Properties | Length: 266aa MW: 29886.8 Da PI: 8.9324 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.3 | 8.6e-30 | 116 | 175 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rs +dp++++ tYegeHnh+ EcC054928.40 116 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApSCPVKKKVQRSVDDPSLLVATYEGEHNHR 175 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 26.727 | 111 | 177 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.5E-29 | 111 | 177 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.18E-25 | 112 | 177 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.7E-34 | 116 | 176 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-24 | 117 | 175 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MDTRVDTSLD LRINSFQNCN SNVMVGVSME EFRRMSSENK KLTETLNVVL LGYNALHSQM 60 INLAQGISSN EALESRKRKF EDYIDLDFWK RPTESVKSRT SVAYFQVDPS DTSLVVKDGY 120 QWRKYGQKVT RDNPSPRAYF KCSFAPSCPV KKKVQRSVDD PSLLVATYEG EHNHRCPPQG 180 AKPPSVSPPI SPSSMKPSNQ NPVLDFVRCG FSNLAMKSKQ EAEVGTPPQF LVQEMVSSLT 240 RDPNFTASLA EAISGAMLDR SRTQSW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-21 | 115 | 178 | 13 | 75 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010048883.1 | 1e-179 | PREDICTED: probable WRKY transcription factor 60 | ||||
Swissprot | Q9SK33 | 7e-63 | WRK60_ARATH; Probable WRKY transcription factor 60 | ||||
TrEMBL | A0A059CTM0 | 1e-178 | A0A059CTM0_EUCGR; Uncharacterized protein | ||||
STRING | XP_010048883.1 | 1e-178 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25000.1 | 2e-64 | WRKY DNA-binding protein 60 |